Browse Element(s) Details


Os.56329.1.S1_at

Description gb:AK109866.1
DB_XREF= gi:32995075
TID=Os.56329.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56329 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-A02, full insert sequence.
FL= gb:AK109866.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g419402/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41910Os.57084.1.S1_at10/116+25144629..25147011expressed protein
LOC_Os06g41920OsAffx.28054.1.S1_s_at11/116+25149784..25150239hypothetical protein
LOC_Os06g41930Os.17768.1.S1_at11/116+25157315..25163617zinc-binding family protein, putative, expressed
LOC_Os06g41930Os.24117.1.A1_at7/116+25157315..25163617zinc-binding family protein, putative, expressed
LOC_Os06g41930OsAffx.2636.1.S1_at2/116+25157315..25163617zinc-binding family protein, putative, expressed
LOC_Os06g41940Os.56329.1.S1_at2/116+25171096..25171896hypothetical protein
LOC_Os06g41950OsAffx.28055.1.S1_at11/116+25172498..25176364hypothetical protein
LOC_Os06g41950Os.52401.1.S1_at1/116+25172498..25176364hypothetical protein
LOC_Os06g41960OsAffx.28056.1.S1_at11/116+25182038..25183930Protein kinase domain containing protein
LOC_Os06g41970NANA6+25186717..25189956retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56329.1.S1_at--885--5312Chr06:25171491..25171515 (25 bp)
GAAGGTGCGCATCATGCCGATGCTC
LOC_Os06g41940
Os.56329.1.S1_at--948--1791Chr06:25171541..25171565 (25 bp)
ACCGCGACGGCGAAATCAACGAGAA
LOC_Os06g41940
Os.56329.1.S1_at--493--3191NONE
CAACGAGAAGCTTAACGAGAGGACT
NONE
Os.56329.1.S1_at--206--2011NONE
ACTCTCGGCGAGTCGGTGATGACAC
NONE
Os.56329.1.S1_at--950--7191NONE
GTCGGTGATGACACGGCCATGCTGT
NONE
Os.56329.1.S1_at--611--1591NONE
AGCTCCGGCGACAAATTAGCGGCGG
NONE
Os.56329.1.S1_at--952--7351NONE
GTGAAGAGGCTGCTCAGCACCATCG
NONE
Os.56329.1.S1_at--1012--5771NONE
GACGAGGACGCCGAGTGATAAAATG
NONE
Os.56329.1.S1_at--899--9791NONE
TAAGCATGCGGATGATCGACAAGTT
NONE
Os.56329.1.S1_at--1157--7131NONE
GTCTTGTTTATTTGGTCATATGCCT
NONE
Os.56329.1.S1_at--1128--7811NONE
GGTCATATGCCTTTGTCAATTTGAT
NONE
Target Sequence 
GAAGGTGCGCATCATGCCGATGCTCGCGGCGAACGGATGCGGCGGCGACGACCGCGACGGCGAAATCAACGAGAAGCTTA
ACGAGAGGACTCTCGGCGAGTCGGTGATGACACGGCCATGCTGTCCGGCGAGCTCCGGCGACAAATTAGCGGCGGCGGCG
CCGCCGGTGAAGAGGCTGCTCAGCACCATCGACGAGGACGCCGAGTGATAAAATGGAATTGATCGAAGCATAAGCATGCG
GATGATCGACAAGTTGAAAAGAAATTAAGATTGTTGATACTTTTTTTTGTTTACTTTGTTAGGTGGGTTGACAAATTTTT
GGGGGTAGAAATTTAGTTAGTTAAAGAGCCAATGATACCAAGGAAATGTCTTGTTTATTTGGTCATATGCCTTTGTCAAT
TTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis