Browse Element(s) Details

Os.57084.1.S1_at

Description

gb:AK110884.1
DB_XREF= gi:32996093
TID=Os.57084.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57084 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-G12, full insert sequence.
FL= gb:AK110884.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g41910	10/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g41880	OsAffx.5079.1.S1_at	11/11	6	+	25117152..25125145	Subtilisin N-terminal Region family protein, expressed
LOC_Os06g41890	NA	NA	6	+	25130761..25131535	hypothetical protein
LOC_Os06g41900	OsAffx.22940.1.S1_s_at	11/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	OsAffx.22940.2.S1_s_at	11/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	OsAffx.22940.5.S1_at	11/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	Os.35344.3.S1_x_at	10/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	OsAffx.22940.5.S1_x_at	10/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	Os.35344.18.S1_x_at	10/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	OsAffx.22940.3.S1_x_at	9/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	OsAffx.22940.2.S1_at	6/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	OsAffx.31552.2.S1_at	1/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41910	Os.57084.1.S1_at	10/11	6	+	25144629..25147011	expressed protein
LOC_Os06g41920	OsAffx.28054.1.S1_s_at	11/11	6	+	25149784..25150239	hypothetical protein
LOC_Os06g41930	Os.17768.1.S1_at	11/11	6	+	25157315..25163617	zinc-binding family protein, putative, expressed
LOC_Os06g41930	Os.24117.1.A1_at	7/11	6	+	25157315..25163617	zinc-binding family protein, putative, expressed
LOC_Os06g41930	OsAffx.2636.1.S1_at	2/11	6	+	25157315..25163617	zinc-binding family protein, putative, expressed
LOC_Os06g41940	Os.56329.1.S1_at	2/11	6	+	25171096..25171896	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0005737	cellular_component	cytoplasm
GO:0005773	cellular_component	vacuole

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.57084.1.S1_at--610--485	1	Chr06:25146420..25146444 (25 bp)	GCTACTGGAGTTCATATGTCGGAGA	LOC_Os06g41910
Os.57084.1.S1_at--340--239	1	Chr06:25146469..25146493 (25 bp)	AAACGGAGCACCTCATCCGATACTA	LOC_Os06g41910
Os.57084.1.S1_at--847--145	1	Chr06:25146580..25146604 (25 bp)	AGAAGACGCCCTGGTACTACGATGA	LOC_Os06g41910
Os.57084.1.S1_at--959--497	1	Chr06:25146607..25146631 (25 bp)	GCATGAAGCGCATAGCCGACACAGT	LOC_Os06g41910
Os.57084.1.S1_at--201--529	1	Chr06:25146673..25146697 (25 bp)	GAATGTGCCATGATCGACCACCAGA	LOC_Os06g41910
Os.57084.1.S1_at--771--7	1	Chr06:25146717..25146741 (25 bp)	ATTGCTGCTGTCCACTCGTGAGGAT	LOC_Os06g41910
Os.57084.1.S1_at--507--35	1	Chr06:25146773..25146797 (25 bp)	ATAACCTATGATTTGGACCCCTCTG	LOC_Os06g41910
Os.57084.1.S1_at--1000--735	1	Chr06:25146822..25146846 (25 bp)	GTGAAGCTGCAACCCCAAACGAATG	LOC_Os06g41910
Os.57084.1.S1_at--327--297	1	Chr06:25146843..25146867 (25 bp)	AATGGATGTTTATGCGCCACTACAA	LOC_Os06g41910
Os.57084.1.S1_at--225--61	1	Chr06:25146854..25146878 (25 bp)	ATGCGCCACTACAATTCAGTTTCTG	LOC_Os06g41910
Os.57084.1.S1_at--1137--893	1	Chr06:25146994..25147018 (25 bp)	TGACGACAGACTTGGTTCATTATGC	NONE

Target Sequence

GCTACTGGAGTTCATATGTCGGAGAATGTTATNGGGAACACCACGCACAAAACGGAGCACCTCATCCGATACTACCACTA
CCACAATACCATCAATGTGATTGGCGAGGTATGCCGCGAGTTTGTGCCCATTCCACCCAATGGTGGATTAATCTGGTCCG
AGAAGACGCCCTGGTACTACGATGACAGCATGAAGCGCATAGCCGACACAGTGCGGGAATTCGAGAGGAAGACCATTGGT
GATGTGCGAGTGTGAATGTGCCATGATCGACCACCAGAGAATGAACAGATGTATAGTATTGCTGCTGTCCACTCGTGAGG
ATTAGCAACGGCATGATGTGATCAGCTGAACAGATAACCTATGATTTGGACCCCTCTGAGCTGACAGAGATGTGAATTAA
AAGTGAAGCTGCAACCCCAAACGAATGGATGTTTATGCGCCACTACAATTCAGTTTCTGCAAAGGTGAANATNTTGTAAA
CAGANATCTCATCNACTGTNAATCTCATTGTNTNATTTATGATNTATAAAGTGNNTTCCATTCACTCAAAGATACAATCG
CATAAGAAATTTATATGACGACAGACTTGGTTCATTATGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis