Browse Element(s) Details

Os.17768.1.S1_at

Description

gb:AK065620.1
DB_XREF= gi:32975638
TID=Os.17768.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.17768 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013030D23, full insert sequence.
FL= gb:AK065620.1 gb:AK061790.1 gb:AK067251.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g41930	11/11	zinc-binding family protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g41900	OsAffx.22940.1.S1_s_at	11/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	OsAffx.22940.2.S1_s_at	11/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	OsAffx.22940.5.S1_at	11/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	Os.35344.3.S1_x_at	10/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	OsAffx.22940.5.S1_x_at	10/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	Os.35344.18.S1_x_at	10/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	OsAffx.22940.3.S1_x_at	9/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	OsAffx.22940.2.S1_at	6/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41900	OsAffx.31552.2.S1_at	1/11	6	+	25132836..25140389	transposon protein, putative, Mutator sub-class
LOC_Os06g41910	Os.57084.1.S1_at	10/11	6	+	25144629..25147011	expressed protein
LOC_Os06g41920	OsAffx.28054.1.S1_s_at	11/11	6	+	25149784..25150239	hypothetical protein
LOC_Os06g41930	Os.17768.1.S1_at	11/11	6	+	25157315..25163617	zinc-binding family protein, putative, expressed
LOC_Os06g41930	Os.24117.1.A1_at	7/11	6	+	25157315..25163617	zinc-binding family protein, putative, expressed
LOC_Os06g41930	OsAffx.2636.1.S1_at	2/11	6	+	25157315..25163617	zinc-binding family protein, putative, expressed
LOC_Os06g41940	Os.56329.1.S1_at	2/11	6	+	25171096..25171896	hypothetical protein
LOC_Os06g41950	OsAffx.28055.1.S1_at	11/11	6	+	25172498..25176364	hypothetical protein
LOC_Os06g41950	Os.52401.1.S1_at	1/11	6	+	25172498..25176364	hypothetical protein
LOC_Os06g41960	OsAffx.28056.1.S1_at	11/11	6	+	25182038..25183930	Protein kinase domain containing protein
LOC_Os06g41970	NA	NA	6	+	25186717..25189956	retrotransposon protein, putative, unclassified

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Gene Ontology Classification

GO id	Type	Name
GO:0005488	molecular_function	binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.17768.1.S1_at--746--655	1	Chr06:25163048..25163072 (25 bp)	GATTAGCAGCTAGCCTGATACATAT	LOC_Os06g41930
Os.17768.1.S1_at--357--851	1	Chr06:25163153..25163177 (25 bp)	TGGCAAATGTTGTCATCTGGAGTAA	LOC_Os06g41930
Os.17768.1.S1_at--529--623	1	Chr06:25163198..25163222 (25 bp)	GATGGCCTGCTTTCATGCATGTAGA	LOC_Os06g41930
Os.17768.1.S1_at--66--19	1	Chr06:25163334..25163358 (25 bp)	ATTTATCTCGGTTTGTGTAGTAGTA	LOC_Os06g41930
Os.17768.1.S1_at--646--693	1	Chr06:25163353..25163377 (25 bp)	GTAGTATATACTTGGCTGTTTGCCC	LOC_Os06g41930
Os.17768.1.S1_at--751--171	1	Chr06:25163380..25163404 (25 bp)	ACCACCCAATGCGTTTATTAGCGTT	LOC_Os06g41930
Os.17768.1.S1_at--305--15	1	Chr06:25163396..25163420 (25 bp)	ATTAGCGTTGTGGTGTGTAGTTTTC	LOC_Os06g41930
Os.17768.1.S1_at--399--683	1	Chr06:25163430..25163454 (25 bp)	GTTTCAGAGTTTCTCCTTTGATCCT	LOC_Os06g41930
Os.17768.1.S1_at--463--637	1	Chr06:25163449..25163473 (25 bp)	GATCCTCTGGGACTTAATTTGTATA	LOC_Os06g41930
Os.17768.1.S1_at--1094--281	1	Chr06:25163537..25163561 (25 bp)	AAGTTGCTTGAATTACTCTCTTGTA	LOC_Os06g41930
Os.17768.1.S1_at--931--531	1	Chr06:25163566..25163590 (25 bp)	GAAGTGGTTATGCACCCACAACTCT	LOC_Os06g41930

Target Sequence

GATTAGCAGCTAGCCTGATACATATAGTTGTATAAAATATACAAGTGTACACAATAATTAATCTAGGTCATGAAGTAAGT
ATATATGTGTACATATGAAATATATTGGCAAATGTTGTCATCTGGAGTAAGTTATAAAGGCCATGGTGGTGATGGCCTGC
TTTCATGCATGTAGACACAAGGTTAAGTTAAGACAAGAAAAAGGGAGACACAGGGAGGATAGAAACATAGGTAGTGGTTT
TTAGGTAGGTCGAGATTAATATGTGAAAAAGGAATAAGCATCATGTATTTATCTCGGTTTGTGTAGTAGTATATACTTGG
CTGTTTGCCCCCACCACCCAATGCGTTTATTAGCGTTGTGGTGTGTAGTTTTCCACTTTTAAGTTTCAGAGTTTCTCCTT
TGATCCTCTGGGACTTAATTTGTATAGACAATGTATGATGTTTTACTTGGAAAAATAAGGGAAAAAATAGAATGATGGAT
GACTTAATTAAGTTGCTTGAATTACTCTCTTGTAAGTGGAAGTGGTTATGCACCCACAACTCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis