Browse Element(s) Details


Os.56331.1.S1_at

Description gb:AK109868.1
DB_XREF= gi:32995077
TID=Os.56331.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56331 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-149-A07, full insert sequence.
FL= gb:AK109868.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g402805/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g40260Os.4610.1.A1_s_at11/118+25349618..25354614SBP domain containing protein, expressed
LOC_Os08g40260Os.10618.1.S1_s_at11/118+25349618..25354614SBP domain containing protein, expressed
LOC_Os08g40270OsAffx.6094.1.S1_x_at11/118+25360662..25363516Protein kinase domain containing protein
LOC_Os08g40280Os.56331.1.S1_at5/118+25365412..25368974Protein kinase domain containing protein, expressed
LOC_Os08g40290Os.46012.2.S1_x_at9/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40290Os.46012.3.S1_x_at6/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40290Os.27088.1.A1_x_at5/118+25372470..25376984retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g40300NANA8+25379188..25385619expressed protein
LOC_Os08g40310OsAffx.29607.1.S1_x_at11/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.5.S1_x_at10/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.3.S1_x_at8/118+25385861..25392208transposon protein, putative, unclassified
LOC_Os08g40310OsAffx.29607.2.S1_s_at5/118+25385861..25392208transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56331.1.S1_at--935--5771Chr08:25368734..25368758 (25 bp)
GACGATGGCCATCACGCAGATCCTG
LOC_Os08g40280
Os.56331.1.S1_at--174--7271Chr08:25368854..25368878 (25 bp)
GTCCAGCCACGTCAGCACGAACATG
LOC_Os08g40280
Os.56331.1.S1_at--535--3411Chr08:25368866..25368890 (25 bp)
CAGCACGAACATGACGTCGACGTCG
LOC_Os08g40280
Os.56331.1.S1_at--989--4071Chr08:25368883..25368907 (25 bp)
CGACGTCGACGTGGAGCGGCAACTT
LOC_Os08g40280
Os.56331.1.S1_at--562--2771Chr08:25368949..25368973 (25 bp)
AAGACGCCTCGGACTCCGTGGTGTG
LOC_Os08g40280
Os.56331.1.S1_at--873--2171Chr08:25369001..25369025 (25 bp)
ACACGTGGCGCTTTGACACGTCGGA
NONE
Os.56331.1.S1_at--786--8951Chr08:25369014..25369038 (25 bp)
TGACACGTCGGATGATCGTTGCCGC
NONE
Os.56331.1.S1_at--823--511Chr08:25369028..25369052 (25 bp)
ATCGTTGCCGCCGTGGAGTCTAACT
NONE
Os.56331.1.S1_at--743--7391Chr08:25369040..25369064 (25 bp)
GTGGAGTCTAACTGTCTAAACCGGG
NONE
Os.56331.1.S1_at--842--7691Chr08:25369063..25369087 (25 bp)
GGGTAATCTCCACGGTGGCAACAAT
NONE
Os.56331.1.S1_at--961--7311Chr08:25369091..25369115 (25 bp)
GTGCTATAGTACAGTTTTATTCTTG
NONE
Target Sequence 
GACGATGGCCATCACGCAGATCCTGCTGCGGTCCACGCCGCCGCCGGAGGTGCCGCCGTTCAAGCCGGCGTTCGTGTGGC
CGGCCATCGACGGCGGGATCGACACGACGACGTCCACGGCGTCCAGCCACGTCAGCACGAACATGACGTCGACGTCGACG
TGGAGCGGCAACTTCATGAGGGGAAGCCGGAGCCACGCGCCGCCGACGCCGGAGCAAGACGCCTCGGACTCCGTGGTGTG
ACGGCGACGGCGGCCGCCGGCGCTGTGACACGTGGCGCTTTGACACGTCGGATGATCGTTGCCGCCGTGGAGTCTAACTG
TCTAAACCGGGGTAATCTCCACGGTGGCAACAATGAAGTGCTATAGTACAGTTTTATTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis