Browse Element(s) Details


Os.5638.1.S1_at

Description gb:AK072397.1
DB_XREF= gi:32982420
TID=Os.5638.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023078P12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023078P12, full insert sequence.
FL= gb:AK072397.1 gb:AK060579.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1661011/11laccase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16580Os.53016.1.S1_at10/113+9117602..9122615expressed protein
LOC_Os03g16580OsAffx.13881.1.S1_at2/113+9117602..9122615expressed protein
LOC_Os03g16600Os.51616.1.S1_at1/113+9136640..9136936expressed protein
LOC_Os03g16610Os.5638.1.S1_at11/113+9146670..9149377laccase, putative, expressed
LOC_Os03g16610OsAffx.21744.2.S1_x_at1/113+9146670..9149377laccase, putative, expressed
LOC_Os03g16620NANA3+9154572..9156326transposon protein, putative, Mutator sub-class
LOC_Os03g16630OsAffx.26598.2.S1_at2/113+9159994..9160812retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g16630OsAffx.26598.2.S1_x_at1/113+9159994..9160812retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os03g16640Os.2987.3.S1_x_at2/113+9162455..9163267retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g16650NANA3+9165484..9166462retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0009834biological_processsecondary cell wall biosynthesis (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5638.1.S1_at--3--7251Chr03:9147278..9147302 (25 bp)
GTCGCCATCAGGTTCTTCGCGGATA
LOC_Os03g16610
Os.5638.1.S1_at--481--351Chr03:9147167..9147280 (25 bp)
ATAACCCTGGTGTCTGGTTCATGCA
LOC_Os03g16610
Os.5638.1.S1_at--88--651Chr03:9147147..9147171 (25 bp)
ATGCATTGCCACCTGGAGGTTCACA
LOC_Os03g16610
Os.5638.1.S1_at--443--7251Chr03:9147049..9147073 (25 bp)
GTCCGATCTTCCCATGTGCTAGAGA
LOC_Os03g16610
Os.5638.1.S1_at--767--8331Chr03:9146995..9147019 (25 bp)
GGCTGTGATTCGTTTATTCCGTTTG
LOC_Os03g16610
Os.5638.1.S1_at--811--91Chr03:9146980..9147004 (25 bp)
ATTCCGTTTGGTTTGCTACACATAA
LOC_Os03g16610
Os.5638.1.S1_at--339--3031Chr03:9146942..9146966 (25 bp)
AATGCCGTACGTACATACCTGCAGG
LOC_Os03g16610
Os.5638.1.S1_at--259--10771Chr03:9146916..9146940 (25 bp)
TTGAGGTCTTGTTTTCCATTCTTCC
LOC_Os03g16610
Os.5638.1.S1_at--303--2331Chr03:9146819..9146843 (25 bp)
AAAGTTCGGCCGTATATGGTCAATA
LOC_Os03g16610
Os.5638.1.S1_at--456--10751Chr03:9146786..9146810 (25 bp)
TTGACTCTTACATTTTGACACCCAC
LOC_Os03g16610
Os.5638.1.S1_at--110--1891Chr03:9146763..9146787 (25 bp)
ACGATGGGCTCAATCTCAGATGACT
LOC_Os03g16610
Target Sequence 
GTCGCCATCAGGTTCTTCGCGGATAACCCTGGTGTCTGGTTCATGCATTGCCACCTGGAGGTTCACACAACCTGGGGGTT
GAAGATGGCATGGGTGGTCAACGACGGCCCGTTGCCTGAGCAGAAGCTGATGCCTCCGCCGTCCGATCTTCCCATGTGCT
AGAGATCGATCAATCGTTGACATTATTTGACCAAGGCTGTGATTCGTTTATTCCGTTTGGTTTGCTACACATAATTTGTC
AATGGATAATGCCGTACGTACATACCTGCAGGATTGAGGTCTTGTTTTCCATTCTTCCAAAGGTGTTGTTTATTCTTGTA
AGGGGTTTGCCATTGTTTTTTTTTTAAATTCTACAAGTACTTTTAGCTCGAAAGTTCGGCCGTATATGGTCAATAAGAAT
AGTTTGACTCTTACATTTTGACACCCACGATGGGCTCAATCTCAGATGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis