Browse Element(s) Details


Os.5649.1.S1_at

Description gb:AU172534
DB_XREF= gi:12622321
DB_XREF=AU172534
CLONE=E2156
TID=Os.5649.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5649 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_181213.1 (A.thaliana) putative glucosyl transferase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0848011/11Cytokinin-O-glucosyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08430OsAffx.14301.1.S1_at7/115+4578998..4586348Boron transporter-like protein 2, putative, expressed
LOC_Os05g08440Os.23289.1.S1_at11/115+4588889..4590693F-box domain containing protein, expressed
LOC_Os05g08450Os.25157.1.A1_at11/115+4591644..4593202expressed protein
LOC_Os05g08460Os.25157.1.A1_at1/115+4598868..4601064F-box domain containing protein
LOC_Os05g08470NANA5+4603276..4603910hypothetical protein
LOC_Os05g08480Os.5649.1.S1_at11/115+4604454..4606307Cytokinin-O-glucosyltransferase 1, putative, expressed
LOC_Os05g08490NANA5+4613459..4614384Cytokinin-O-glucosyltransferase 1, putative
LOC_Os05g08500Os.35344.18.S1_x_at9/115+4615152..4621207transposon protein, putative, Mutator sub-class
LOC_Os05g08500Os.35344.3.S1_x_at8/115+4615152..4621207transposon protein, putative, Mutator sub-class
LOC_Os05g08500OsAffx.22940.5.S1_x_at3/115+4615152..4621207transposon protein, putative, Mutator sub-class
LOC_Os05g08510NANA5+4622209..4623621Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative
LOC_Os05g08519NANA5+4625328..4625561NA
LOC_Os05g08530NANA5+4631245..4636225NPH3 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5649.1.S1_at--385--7511Chr05:4604970..4604994 (25 bp)
GTGGAGTCGCTCTCCCATGGCGTGC
LOC_Os05g08480
Os.5649.1.S1_at--500--871Chr05:4604954..4604978 (25 bp)
ATGGCGTGCCGCTCCTGACATGGCC
LOC_Os05g08480
Os.5649.1.S1_at--823--5651Chr05:4604938..4604962 (25 bp)
GACATGGCCGCACTTTGGCGACCAG
LOC_Os05g08480
Os.5649.1.S1_at--665--5851Chr05:4604919..4604943 (25 bp)
GACCAGTTCCTCAACGAGTGCCTCG
LOC_Os05g08480
Os.5649.1.S1_at--153--5811Chr05:4604835..4604859 (25 bp)
GACGCCGTGAACTCCCCGGTGCAGG
LOC_Os05g08480
Os.5649.1.S1_at--814--9331Chr05:4604669..4604693 (25 bp)
TCGCCGACATGGTCTGGCACGTCGC
LOC_Os05g08480
Os.5649.1.S1_at--1044--5651Chr05:4604634..4604658 (25 bp)
GACATGGTTGTGGTTGATCCGCCGC
LOC_Os05g08480
Os.5649.1.S1_at--960--6251Chr05:4604569..4604593 (25 bp)
GATGGTGTCGCCATCAGTGGCATCA
LOC_Os05g08480
Os.5649.1.S1_at--624--7531Chr05:4604553..4604577 (25 bp)
GTGGCATCAGAAGTCGCCTGAATTT
LOC_Os05g08480
Os.5649.1.S1_at--40--7251Chr05:4604541..4604565 (25 bp)
GTCGCCTGAATTTTTAGTTGCATAT
LOC_Os05g08480
Os.5649.1.S1_at--508--6671Chr05:4604525..4604549 (25 bp)
GTTGCATATGCGAGTGTTAACTGTA
LOC_Os05g08480
Target Sequence 
GTGGAGTCGCTCTCCCATGGCGTGCCGCTCCTGACATGGCCGCACTTTGGCGACCAGTTCCTCAACGAGTGCCTCGCCNG
TCGACGTGCTCGGCGCCGGCGTCCGCGCNGGCNTGAANGGTGCCCGTCACGCACGTCGACGCCGTGAACTCCCCGGTGCA
GGTGCGGAGCGGCGAGGTGGCGAGCGCGGTGGAGGAGCTGATGGGCGACGGGGCGGCGGCGGCGGCGAGGCGCGCGAGGG
CGAGGGAGCTCGCGGCGGAGGCCAGGGCGGCGATGGCGGACGGCGGGTCGTCGGCGCGCGACCTCGCCGACATGGTCTGG
CACGTCGCGCGGAGGAGGGACATGGTTGTGGTTGATCCGCCGCCACCGCCGTCGCCGGGGGGCATCGCCGGTGGCCATGG
CAAGATGGTGTCGCCATCAGTGGCATCAGAAGTCGCCTGAATTTTTAGTTGCATATGCGAGTGTTAACTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis