Browse Element(s) Details


OsAffx.14301.1.S1_at

Description tigr:9632.m04486
TID=OsAffx.14301.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4654011/11hypothetical protein
LOC_Os05g084307/11Boron transporter-like protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46480Os.7470.1.S1_at11/114+27351357..27353621expressed protein
LOC_Os04g46490Os.53049.1.S1_at11/114+27356566..27357899Major intrinsic protein, expressed
LOC_Os04g46500NANA4+27363235..27365489retrotransposon protein, putative, unclassified
LOC_Os04g46510NANA4+27366326..27369025retrotransposon protein, putative, unclassified
LOC_Os04g46520NANA4+27369647..27371087retrotransposon protein, putative, unclassified
LOC_Os04g46530Os.10263.1.S1_at1/114+27373144..27377055Major intrinsic protein, expressed
LOC_Os04g46540OsAffx.14301.1.S1_at11/114+27377842..27378513hypothetical protein
LOC_Os04g46550OsAffx.14302.1.S1_at11/114+27380324..27381041hypothetical protein
LOC_Os04g46560Os.23248.1.A1_at11/114+27386071..27389250Malate dehydrogenase, cytoplasmic, putative, expressed
LOC_Os04g46570Os.11799.1.S1_a_at11/114+27389328..27393393growth regulator like protein, putative, expressed
LOC_Os04g46580Os.52683.1.S1_at9/114+27395681..27398906SBP domain containing protein, expressed
LOC_Os04g46580OsAffx.2442.1.S1_x_at1/114+27395681..27398906SBP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046713biological_processboron transport
GO:0005737cellular_componentcytoplasm
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0015380molecular_functionanion exchanger activity
GO:0046715molecular_functionboron transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14301.1.S1_at--790--931Chr04:27378456..27378480 (25 bp)
AGGCAACTCCTGATTCTCGTCCAAA
LOC_Os04g46540
OsAffx.14301.1.S1_at--882--4532Chr05:4586264..4586288 (25 bp)
GCCCTCGTGTACTCGCAAGCGTGGA
LOC_Os05g08430
OsAffx.14301.1.S1_at--360--5131Chr04:27378415..27378439 (25 bp)
GCAAGCGTGGAACATATGGGCACAT
LOC_Os04g46540
OsAffx.14301.1.S1_at--15--812Chr05:4586235..4586259 (25 bp)
ATGGGCACATGATTCAGCATCCTTC
LOC_Os05g08430
OsAffx.14301.1.S1_at--788--9212Chr05:4586013..4586240 (25 bp)
TCCTTCCCGCAAAGGCTTCCAAGAA
LOC_Os05g08430
OsAffx.14301.1.S1_at--339--3291Chr04:27378151..27378175 (25 bp)
CAAATCAGGCTGAGTAGGGTTCAAG
LOC_Os04g46540
OsAffx.14301.1.S1_at--110--8652Chr05:4585785..4585809 (25 bp)
TGGGAGCCAGTCATCTGTCCAGAAG
LOC_Os05g08430
OsAffx.14301.1.S1_at--880--3271Chr04:27377931..27377955 (25 bp)
CAGAAGAAGGAACTCTTCCCGTCAC
LOC_Os04g46540
OsAffx.14301.1.S1_at--597--9052Chr05:4585729..4585753 (25 bp)
TGCATCCGGCCGCTAGACAATGTTC
LOC_Os05g08430
OsAffx.14301.1.S1_at--598--4132Chr05:4585719..4585743 (25 bp)
CGCTAGACAATGTTCGGCTTTCCTA
LOC_Os05g08430
OsAffx.14301.1.S1_at--194--10612Chr05:4585710..4585731 (22 bp)
TTCGGCTTTCCTATCTTGCGGCAAT
LOC_Os05g08430
Target Sequence 
AGGCAACTCCTGATTCTCGTCCAAACTGCCCTCGTGTACTCGCAAGCGTGGAACATATGGGCACATGATTCAGCATCCTT
CCCGCAAAGGCTTCCAAGAAAACAAATCAGGCTGAGTAGGGTTCAAGGAAACGGTGGCAACAAGGTCCCAGATTTGGAGG
AACACAGGATTGGGGCTCGGTTCAGGATCGACCCCCCATCTGGGAGCCAGTCATCTGTCCAGAAGAAGGAACTCTTCCCG
TCACCCAGCACAATCCTGCATCCGGCCGCTAGACAATGTTCGGCTTTCCTATCTTGCGGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14301.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis