Browse Element(s) Details


Os.52683.1.S1_at

Description gb:AK068749.1
DB_XREF= gi:32978772
TID=Os.52683.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52683 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158C23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158C23, full insert sequence.
FL= gb:AK068749.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g465809/11SBP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46520NANA4+27369647..27371087retrotransposon protein, putative, unclassified
LOC_Os04g46530Os.10263.1.S1_at1/114+27373144..27377055Major intrinsic protein, expressed
LOC_Os04g46540OsAffx.14301.1.S1_at11/114+27377842..27378513hypothetical protein
LOC_Os04g46550OsAffx.14302.1.S1_at11/114+27380324..27381041hypothetical protein
LOC_Os04g46560Os.23248.1.A1_at11/114+27386071..27389250Malate dehydrogenase, cytoplasmic, putative, expressed
LOC_Os04g46570Os.11799.1.S1_a_at11/114+27389328..27393393growth regulator like protein, putative, expressed
LOC_Os04g46580Os.52683.1.S1_at9/114+27395681..27398906SBP domain containing protein, expressed
LOC_Os04g46580OsAffx.2442.1.S1_x_at1/114+27395681..27398906SBP domain containing protein, expressed
LOC_Os04g46600Os.52058.1.S1_at11/114+27408383..27409169expressed protein
LOC_Os04g46610Os.17614.1.S1_at9/114+27414084..27418814PAP_fibrillin family protein, expressed
LOC_Os04g46610Os.27299.1.A1_at1/114+27414084..27418814PAP_fibrillin family protein, expressed
LOC_Os04g46620Os.22700.1.S1_at11/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46620Os.57487.1.S1_x_at6/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46620Os.57487.1.S1_at2/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52683.1.S1_at--309--7531Chr04:27398334..27398358 (25 bp)
GTGGCAATTCTTCTCCGACCGACAG
LOC_Os04g46580
Os.52683.1.S1_at--792--631Chr04:27398503..27398527 (25 bp)
ATGCAGGCCACCACCGCGGCAGGAG
LOC_Os04g46580
Os.52683.1.S1_at--29--7511Chr04:27398635..27398659 (25 bp)
GTGGTCTGAGTGTCCGACCTGCCAG
LOC_Os04g46580
Os.52683.1.S1_at--807--6391NONE
GATCGATCAGTGGTGGGCGCGTGCG
NONE
Os.52683.1.S1_at--1114--3991NONE
CGTGCGCACGGCTGGAGCTCTGTCC
NONE
Os.52683.1.S1_at--289--4591Chr04:27398775..27398799 (25 bp)
GCGCAGCCGTGCAATCAACTTGAGT
LOC_Os04g46580
Os.52683.1.S1_at--755--3071Chr04:27398787..27398811 (25 bp)
AATCAACTTGAGTTCGTTGGACAAT
LOC_Os04g46580
Os.52683.1.S1_at--897--6611Chr04:27398802..27398826 (25 bp)
GTTGGACAATAGTGTCTCGTCTCGT
LOC_Os04g46580
Os.52683.1.S1_at--153--10071Chr04:27398811..27398835 (25 bp)
TAGTGTCTCGTCTCGTAGCAATCTA
LOC_Os04g46580
Os.52683.1.S1_at--1053--6951Chr04:27398825..27398849 (25 bp)
GTAGCAATCTATCCCGATGTAGCAG
LOC_Os04g46580
Os.52683.1.S1_at--1125--4191Chr04:27398837..27398861 (25 bp)
CCCGATGTAGCAGTACTGGTGCAGT
LOC_Os04g46580
Target Sequence 
GTGGCAATTCTTCTCCGACCGACAGCCGCCACCAGCTGGCCGTCCAACGGGCCGCAGCCCGGGCTCCGAAACGGCCGGTG
GCTGGCACGCGCACCTGCAGGCGCGGCCGCCACCGCCCGGCGCCGGAGGGCAGCACGAGAATCAGTCGGGGCACGTGACG
CTCGACCTCATGCAGGCCACCACCGCGGCAGGAGGCAGCGGCGCGCCGTTCCGGCCCGTGCCAGCGAGGCCCCCCAAGGA
GGGCGGCGACGCCGGCTGCACCTCCGACGCGTGGACGCCGTCGCCCATGGAGGGCGCCCGCGTGGTCTGAGTGTCCGACC
TGCCAGCCGCGACGTCGCCGCGCGTGCACCACGGTCCCTAGCTCCCGTGTCAGCTGGGCGTGGGAAGCGATCGATCAGTG
GTGGGCGCGTGCGCACGGCTGGAGCTCTGTCCCGACGCCGCGCGCAGCCGTGCAATCAACTTGAGTTCGTTGGACAATAG
TGTCTCGTCTCGTAGCAATCTATCCCGATGTAGCAGTACTGGTGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52683.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis