Browse Element(s) Details


Os.22700.1.S1_at

Description gb:AK121568.1
DB_XREF= gi:37991191
TID=Os.22700.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22700 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033035C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033035C24, full insert sequence.
FL= gb:AK121568.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4662011/11T-complex protein 1, alpha subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46580Os.52683.1.S1_at9/114+27395681..27398906SBP domain containing protein, expressed
LOC_Os04g46580OsAffx.2442.1.S1_x_at1/114+27395681..27398906SBP domain containing protein, expressed
LOC_Os04g46600Os.52058.1.S1_at11/114+27408383..27409169expressed protein
LOC_Os04g46610Os.17614.1.S1_at9/114+27414084..27418814PAP_fibrillin family protein, expressed
LOC_Os04g46610Os.27299.1.A1_at1/114+27414084..27418814PAP_fibrillin family protein, expressed
LOC_Os04g46620Os.22700.1.S1_at11/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46620Os.57487.1.S1_x_at6/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46620Os.57487.1.S1_at2/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46630NANA4+27426521..27428347Beta-expansin 2 precursor, putative, expressed
LOC_Os04g46639NANA4+27429989..27430351hypothetical protein
LOC_Os04g46650Os.2403.1.S1_at10/114+27436573..27437986Beta-expansin 2 precursor, putative, expressed
LOC_Os04g46660Os.51142.1.S1_at11/114+27442456..27443739Cyclin, N-terminal domain containing protein, expressed
LOC_Os04g46670Os.52858.1.S1_at10/114+27446934..27449189Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22700.1.S1_at--1092--10211Chr04:27424398..27424418 (21 bp)
TATTCAGTTTGCCACTGAGGCGGCC
LOC_Os04g46620
Os.22700.1.S1_at--60--3871Chr04:27424408..27424432 (25 bp)
CTGAGGCGGCCATTACTATCCTGAG
LOC_Os04g46620
Os.22700.1.S1_at--1123--8951Chr04:27424492..27424516 (25 bp)
TGACACTCATTTTTGTGATCACGAG
LOC_Os04g46620
Os.22700.1.S1_at--414--3351Chr04:27424511..27424535 (25 bp)
CACGAGTGATCTGCTATGTGTGATG
LOC_Os04g46620
Os.22700.1.S1_at--453--7471Chr04:27424528..27424552 (25 bp)
GTGTGATGGTTGTGATAGACCCCTA
LOC_Os04g46620
Os.22700.1.S1_at--236--6491Chr04:27424541..27424565 (25 bp)
GATAGACCCCTAGAATGTTTGTAAG
LOC_Os04g46620
Os.22700.1.S1_at--215--5291Chr04:27424625..27424649 (25 bp)
GAATGTGTATCCGTATTGTGTTTAA
LOC_Os04g46620
Os.22700.1.S1_at--447--3011Chr04:27424648..27424672 (25 bp)
AATGCTATTTTGGAACGACCGTCAC
LOC_Os04g46620
Os.22700.1.S1_at--738--5431Chr04:27424660..27424684 (25 bp)
GAACGACCGTCACGGTTTACTCTCT
LOC_Os04g46620
Os.22700.1.S1_at--235--2371Chr04:27424718..27424742 (25 bp)
AAACGAGGACCTCTTGCAGACTGTT
LOC_Os04g46620
Os.22700.1.S1_at--1028--5831Chr04:27424725..27424749 (25 bp)
GACCTCTTGCAGACTGTTGCGGTAA
LOC_Os04g46620
Target Sequence 
TATTCAGTTTGCCACTGAGGCGGCCATTACTATCCTGAGGATTGATGACATGATCAAACTTACGAAGGAAGAGAGCGGGA
ACGAAGAGTAACAAGCATTGACACTCATTTTTGTGATCACGAGTGATCTGCTATGTGTGATGGTTGTGATAGACCCCTAG
AATGTTTGTAAGTTTTTTGTTTNTGTCTTTAATTAGACATTCACTTAGGATATTGTACCAAGGAGTTNCCGGGAGAATGT
GTATCCGTATTGTGTTTAATGCTATTTTGGAACGACCGTCACGGTTTACTCTCTAANANNNNNNNNNNNAAANNNNNNNN
NNNNNNAAAACGAGGACCTCTTGCAGACTGTTGCGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22700.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis