Browse Element(s) Details


Os.2403.1.S1_at

Description gb:AF261273.1
DB_XREF= gi:8118427
GEN=EXPB5
TID=Os.2403.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2403 (NCBI UniGene Cluster)
DEF=Oryza sativa beta-expansin (EXPB5) mRNA, complete cds.
PROD=beta-expansin
FL= gb:AF261273.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4665010/11Beta-expansin 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46610Os.17614.1.S1_at9/114+27414084..27418814PAP_fibrillin family protein, expressed
LOC_Os04g46610Os.27299.1.A1_at1/114+27414084..27418814PAP_fibrillin family protein, expressed
LOC_Os04g46620Os.22700.1.S1_at11/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46620Os.57487.1.S1_x_at6/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46620Os.57487.1.S1_at2/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46630NANA4+27426521..27428347Beta-expansin 2 precursor, putative, expressed
LOC_Os04g46639NANA4+27429989..27430351hypothetical protein
LOC_Os04g46650Os.2403.1.S1_at10/114+27436573..27437986Beta-expansin 2 precursor, putative, expressed
LOC_Os04g46660Os.51142.1.S1_at11/114+27442456..27443739Cyclin, N-terminal domain containing protein, expressed
LOC_Os04g46670Os.52858.1.S1_at10/114+27446934..27449189Zinc finger, C2H2 type family protein, expressed
LOC_Os04g46680Os.50594.1.S1_at11/114+27456211..27457548Zinc finger, C2H2 type family protein, expressed
LOC_Os04g46690OsAffx.26141.2.S1_at11/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.4.S1_at9/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.3.S1_x_at7/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.4.S1_x_at6/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.38172.1.S1_x_at5/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.43567.1.S1_x_at3/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.53217.1.S1_x_at1/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.29987.1.S1_at1/114+27460934..27468516hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2403.1.S1_at--938--551Chr04:27437453..27437477 (25 bp)
ATCCTGGTCCAGTACGCGAACGGCG
LOC_Os04g46650
Os.2403.1.S1_at--759--7771NONE
GGTGCACATCATGAAGGCCCGCGGC
NONE
Os.2403.1.S1_at--219--7891Chr04:27437679..27437703 (25 bp)
GGTTGACCTACCGATCCACCGTGAA
LOC_Os04g46650
Os.2403.1.S1_at--794--3711Chr04:27437737..27437761 (25 bp)
CTACGTACGCGCGTGTTTGTTAACG
LOC_Os04g46650
Os.2403.1.S1_at--591--8771Chr04:27437750..27437774 (25 bp)
TGTTTGTTAACGTCGCCGCGATAGA
LOC_Os04g46650
Os.2403.1.S1_at--221--10051Chr04:27437771..27437795 (25 bp)
TAGATCCATCGCGAGGCAGAAGCTC
LOC_Os04g46650
Os.2403.1.S1_at--429--1451Chr04:27437788..27437812 (25 bp)
AGAAGCTCGCCTCGTCGAAGTGAGT
LOC_Os04g46650
Os.2403.1.S1_at--444--2871Chr04:27437879..27437903 (25 bp)
AAGTGTTCGTGATGTGTGTTCTCCC
LOC_Os04g46650
Os.2403.1.S1_at--414--9051Chr04:27437916..27437940 (25 bp)
TGCAGAGCTGCTTCTAGTGACGTCT
LOC_Os04g46650
Os.2403.1.S1_at--522--7371Chr04:27437932..27437956 (25 bp)
GTGACGTCTCTTGCTTGGTTATAAC
LOC_Os04g46650
Os.2403.1.S1_at--1068--9791Chr04:27437958..27437982 (25 bp)
TAACCGAATTCTGCGTTGCGATTTG
LOC_Os04g46650
Target Sequence 
ATCCTGGTCCAGTACGCGAACGGCGACGGCGACCTCGCCGCGGTGCACATCATGAAGGCCCGCGGCGGCGGCGGGTGGAA
GGCGATGCAGCAGTCGTGGGGCGCCACCTGGCGCCTCAACTCCAACACCGGGAAGCCGCTGAGCCCGCCGTTCTCGATCC
GGCTCACCTCGGGCTCCGGCAAGGTGCTCGTCGCCAACAACGTCATCCCCTCCGGGTGGCAGGCCGGGTTGACCTACCGA
TCCACCGTGAACTACGCCGCCTAATGCGGCGGCGTCGTGCGCGACTACGTACGCGCGTGTTTGTTAACGTCGCCGCGATA
GATCCATCGCGAGGCAGAAGCTCGCCTCGTCGAAGTGAGTTCGGTGTGTGCGCGTCCGGGAATCGTGCGCAGCCGCGGTA
AAAGAGGAGTTCGATCTGTTAGTGTTAAGTGTTCGTGATGTGTGTTCTCCCTCCGTGGCCGTTTGCAGAGCTGCTTCTAG
TGACGTCTCTTGCTTGGTTATAACTTAACCGAATTCTGCGTTGCGATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2403.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis