Browse Element(s) Details


OsAffx.26141.2.S1_at

Description tigr:9632.m04500
TID=OsAffx.26141.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4669011/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46650Os.2403.1.S1_at10/114+27436573..27437986Beta-expansin 2 precursor, putative, expressed
LOC_Os04g46660Os.51142.1.S1_at11/114+27442456..27443739Cyclin, N-terminal domain containing protein, expressed
LOC_Os04g46670Os.52858.1.S1_at10/114+27446934..27449189Zinc finger, C2H2 type family protein, expressed
LOC_Os04g46680Os.50594.1.S1_at11/114+27456211..27457548Zinc finger, C2H2 type family protein, expressed
LOC_Os04g46690OsAffx.26141.2.S1_at11/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.4.S1_at9/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.3.S1_x_at7/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.4.S1_x_at6/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.38172.1.S1_x_at5/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.43567.1.S1_x_at3/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.53217.1.S1_x_at1/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.29987.1.S1_at1/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46700Os.24315.1.S2_at11/114+27471768..27475152expressed protein
LOC_Os04g46700Os.24315.1.S1_at11/114+27471768..27475152expressed protein
LOC_Os04g46710OsAffx.26487.1.S1_at11/114+27475404..27477180thioesterase family protein
LOC_Os04g46720NANA4+27480036..27480548transposon protein, putative, unclassified
LOC_Os04g46730OsAffx.26488.1.S1_at10/114+27481949..27483552Pollen thioesterase, putative, expressed
LOC_Os04g46740Os.52445.1.S1_at11/114+27487575..27489753Pectinesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26141.2.S1_at--1101--371Chr04:27466306..27466326 (21 bp)
ATCAACAGCACAAGCTTTGGTCAAT
LOC_Os04g46690
OsAffx.26141.2.S1_at--258--10851Chr04:27468012..27468034 (23 bp)
TTGGTCAATATGGACCTCGCACCTT
LOC_Os04g46690
OsAffx.26141.2.S1_at--600--9351Chr04:27468026..27468050 (25 bp)
TCGCACCTTCCCTGGATTTGATAGG
LOC_Os04g46690
OsAffx.26141.2.S1_at--617--2191Chr04:27468080..27468104 (25 bp)
ACAAAATTGCTCACATTGCTGTAAG
LOC_Os04g46690
OsAffx.26141.2.S1_at--488--9791Chr04:27468101..27468125 (25 bp)
TAAGCAATTTGCCTACCATTCCACT
LOC_Os04g46690
OsAffx.26141.2.S1_at--867--9211Chr04:27468120..27468144 (25 bp)
TCCACTCTATGTGTATGAGATCCAG
LOC_Os04g46690
OsAffx.26141.2.S1_at--653--8431Chr04:27468258..27468282 (25 bp)
GGCCTTCAGTTTGCCATTTAGCAAG
LOC_Os04g46690
OsAffx.26141.2.S1_at--189--9851Chr04:27468286..27468310 (25 bp)
TACATAAACAACCACCTTTCAACAC
LOC_Os04g46690
OsAffx.26141.2.S1_at--525--7371Chr04:27468328..27468352 (25 bp)
GTGACTCTGGTTGGATCAGCTGAAT
LOC_Os04g46690
OsAffx.26141.2.S1_at--31--6451Chr04:27468341..27468365 (25 bp)
GATCAGCTGAATCCTTTGAGATGAG
LOC_Os04g46690
OsAffx.26141.2.S1_at--588--2671Chr04:27468385..27468409 (25 bp)
AAGCGGGCTACCTTTACAACTAGAT
LOC_Os04g46690
Target Sequence 
ATCAACAGCACAAGCTTTGGTCAATATGGACCTCGCACCTTCCCTGGATTTGATAGGTAGTACTGGTATGGGACTGAACA
TGCAGTACAAAATTGCTCACATTGCTGTAAGCAATTTGCCTACCATTCCACTCTATGTGTATGAGATCCAGATGACTAAT
TTGACAAAAGGGAAAATGGCCTTCAGTTTGCCATTTAGCAAGCAGTACATAAACAACCACCTTTCAACACCAATTGATGA
TTTACTTGTGACTCTGGTTGGATCAGCTGAATCCTTTGAGATGAGACTGAAGAAATCCAAAGATAAGCGGGCTACCTTTA
CAACTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26141.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis