Browse Element(s) Details


Os.50594.1.S1_at

Description gb:AK121993.1
DB_XREF= gi:37991616
TID=Os.50594.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50594 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033109L03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033109L03, full insert sequence.
FL= gb:AK121993.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4668011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46650Os.2403.1.S1_at10/114+27436573..27437986Beta-expansin 2 precursor, putative, expressed
LOC_Os04g46660Os.51142.1.S1_at11/114+27442456..27443739Cyclin, N-terminal domain containing protein, expressed
LOC_Os04g46670Os.52858.1.S1_at10/114+27446934..27449189Zinc finger, C2H2 type family protein, expressed
LOC_Os04g46680Os.50594.1.S1_at11/114+27456211..27457548Zinc finger, C2H2 type family protein, expressed
LOC_Os04g46690OsAffx.26141.2.S1_at11/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.4.S1_at9/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.3.S1_x_at7/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.4.S1_x_at6/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.38172.1.S1_x_at5/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.43567.1.S1_x_at3/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.53217.1.S1_x_at1/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.29987.1.S1_at1/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46700Os.24315.1.S2_at11/114+27471768..27475152expressed protein
LOC_Os04g46700Os.24315.1.S1_at11/114+27471768..27475152expressed protein
LOC_Os04g46710OsAffx.26487.1.S1_at11/114+27475404..27477180thioesterase family protein
LOC_Os04g46720NANA4+27480036..27480548transposon protein, putative, unclassified
LOC_Os04g46730OsAffx.26488.1.S1_at10/114+27481949..27483552Pollen thioesterase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50594.1.S1_at--312--4611Chr04:27457099..27457123 (25 bp)
GCGACGATATTCCAGCCATGATTAA
LOC_Os04g46680
Os.50594.1.S1_at--855--2571Chr04:27457128..27457152 (25 bp)
AACGGCTTCATTGATCTGAACCTCC
LOC_Os04g46680
Os.50594.1.S1_at--42--9511Chr04:27457201..27457225 (25 bp)
TCTCCTCGAAGCCAGGTTCTTGAAA
LOC_Os04g46680
Os.50594.1.S1_at--194--1551Chr04:27457248..27457272 (25 bp)
AGCATACTGGCTGTTCAGTGCTCTC
LOC_Os04g46680
Os.50594.1.S1_at--720--9511Chr04:27457271..27457295 (25 bp)
TCTCTCCTTTCGGTTGATTCCAAAG
LOC_Os04g46680
Os.50594.1.S1_at--439--1371Chr04:27457326..27457350 (25 bp)
AGAGCTGCTTAACCAGGCAGCCGAA
LOC_Os04g46680
Os.50594.1.S1_at--1014--1391Chr04:27457377..27457401 (25 bp)
AGACATCTTTGCTTTGGTAGTTTTT
LOC_Os04g46680
Os.50594.1.S1_at--11--9251Chr04:27457454..27457478 (25 bp)
TCCATTCTGTTCTGTCTTTTTGTTT
LOC_Os04g46680
Os.50594.1.S1_at--1138--6831Chr04:27457475..27457499 (25 bp)
GTTTGTTTCAAGCTACCCGAACAGT
LOC_Os04g46680
Os.50594.1.S1_at--884--8231Chr04:27457509..27457533 (25 bp)
GGCAACTAGCAGAGCTTAGCATCTT
LOC_Os04g46680
Os.50594.1.S1_at--755--10451Chr04:27457524..27457548 (25 bp)
TTAGCATCTTGCTTACTTCTTGATC
LOC_Os04g46680
Target Sequence 
GCGACGATATTCCAGCCATGATTAAAAGCAACGGCTTCATTGATCTGAACCTCCCGGCGCCGTTCGACGACGTGGAGCTC
TCCGCCGTTTCAGATCCTTTCCTCTCCTCGAAGCCAGGTTCTTGAAAGCAAGCAGAGCATGAGAGAGCGAGCATACTGGC
TGTTCAGTGCTCTCTCTCCTTTCGGTTGATTCCAAAGAAGATGGTTAGAGCTATGGATTCGAGAGAAAGAGCTGCTTAAC
CAGGCAGCCGAAAAGGTAAAGAAAATATCATAAAAAGGAGACATCTTTGCTTTGGTAGTTTTTTTTTTCTCAGTTGTTTT
GTTCATTCAGCTACAAAAATTGCTTGATGCTGTCCTCCATTCTGTTCTGTCTTTTTGTTTGTTTCAAGCTACCCGAACAG
TGTACATTGGGGCAACTAGCAGAGCTTAGCATCTTGCTTACTTCTTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis