Browse Element(s) Details


Os.51142.1.S1_at

Description gb:AK061100.1
DB_XREF= gi:32971118
TID=Os.51142.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51142 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-207-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-207-A10, full insert sequence.
FL= gb:AK061100.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4666011/11Cyclin, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46610Os.17614.1.S1_at9/114+27414084..27418814PAP_fibrillin family protein, expressed
LOC_Os04g46610Os.27299.1.A1_at1/114+27414084..27418814PAP_fibrillin family protein, expressed
LOC_Os04g46620Os.22700.1.S1_at11/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46620Os.57487.1.S1_x_at6/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46620Os.57487.1.S1_at2/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46630NANA4+27426521..27428347Beta-expansin 2 precursor, putative, expressed
LOC_Os04g46639NANA4+27429989..27430351hypothetical protein
LOC_Os04g46650Os.2403.1.S1_at10/114+27436573..27437986Beta-expansin 2 precursor, putative, expressed
LOC_Os04g46660Os.51142.1.S1_at11/114+27442456..27443739Cyclin, N-terminal domain containing protein, expressed
LOC_Os04g46670Os.52858.1.S1_at10/114+27446934..27449189Zinc finger, C2H2 type family protein, expressed
LOC_Os04g46680Os.50594.1.S1_at11/114+27456211..27457548Zinc finger, C2H2 type family protein, expressed
LOC_Os04g46690OsAffx.26141.2.S1_at11/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.4.S1_at9/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.3.S1_x_at7/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.4.S1_x_at6/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.38172.1.S1_x_at5/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.43567.1.S1_x_at3/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.53217.1.S1_x_at1/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.29987.1.S1_at1/114+27460934..27468516hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0004693molecular_functioncyclin-dependent protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51142.1.S1_at--1078--7211Chr04:27443220..27443244 (25 bp)
GTCGAGGACCGGAACTACAAGAACT
LOC_Os04g46660
Os.51142.1.S1_at--593--2751Chr04:27443238..27443262 (25 bp)
AAGAACTCGTACTTCGCCGCGGTGG
LOC_Os04g46660
Os.51142.1.S1_at--33--2591Chr04:27443331..27443355 (25 bp)
AACGTGAGCGTCAGCGTGTTCCAGA
LOC_Os04g46660
Os.51142.1.S1_at--1047--4651Chr04:27443344..27443368 (25 bp)
GCGTGTTCCAGAGCTACTGCCGGCA
LOC_Os04g46660
Os.51142.1.S1_at--211--1671Chr04:27443483..27443507 (25 bp)
AGCCCAGTAGACGTCAGCTCCGGAG
LOC_Os04g46660
Os.51142.1.S1_at--660--91Chr04:27443513..27443537 (25 bp)
ATTCGCGCGTGATCTGCCAGTTGCC
LOC_Os04g46660
Os.51142.1.S1_at--7--5131Chr04:27443553..27443577 (25 bp)
GCACAGCAGCCGCACGATTTGATCG
LOC_Os04g46660
Os.51142.1.S1_at--967--9191Chr04:27443586..27443610 (25 bp)
TGCCACTCGAGTGCCCAGAAAGATC
LOC_Os04g46660
Os.51142.1.S1_at--629--10111Chr04:27443626..27443650 (25 bp)
TATGGTTTGCTCGTGTACTTAGGAT
LOC_Os04g46660
Os.51142.1.S1_at--453--7351Chr04:27443664..27443688 (25 bp)
GTGCAATGCAATTGTTCCTCTCTAC
LOC_Os04g46660
Os.51142.1.S1_at--1116--6691Chr04:27443677..27443701 (25 bp)
GTTCCTCTCTACCTCGATTGGTAAA
LOC_Os04g46660
Target Sequence 
GTCGAGGACCGGAACTACAAGAACTCGTACTTCGCCGCGGTGGGCGGGCTGACCGCCGCGGAACTGAGCTCGCTGGAGCT
GGACTTCCTCTTCCTGATGCAGTTCAGGCTCAACGTGAGCGTCAGCGTGTTCCAGAGCTACTGCCGGCACCTGGAGAGGG
AGGTGAGCTACGGCGGCGGGTACCAGGTGGAGAGGTGCCTCAAGAAGGCCCTCGTCTGCTCCGGCGAGGCGCAGGCGCAG
CAGAGGCAAGCGGCGTCGGCGGCAGCCCAGTAGACGTCAGCTCCGGAGCCGCCATTCGCGCGTGATCTGCCAGTTGCCCG
CCACAGGCGGCCGGCACAGCAGCCGCACGATTTGATCGCCGGCAGCTGCCACTCGAGTGCCCAGAAAGATCAAGGATGTA
AATAGTTATGGTTTGCTCGTGTACTTAGGATAGGAGTAAGAATTGTGCAATGCAATTGTTCCTCTCTACCTCGATTGGTA
AA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis