Browse Element(s) Details


Os.17614.1.S1_at

Description gb:AK068663.1
DB_XREF= gi:32978680
TID=Os.17614.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013164L14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013164L14, full insert sequence.
FL= gb:AK068663.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g466109/11PAP_fibrillin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46560Os.23248.1.A1_at11/114+27386071..27389250Malate dehydrogenase, cytoplasmic, putative, expressed
LOC_Os04g46570Os.11799.1.S1_a_at11/114+27389328..27393393growth regulator like protein, putative, expressed
LOC_Os04g46580Os.52683.1.S1_at9/114+27395681..27398906SBP domain containing protein, expressed
LOC_Os04g46580OsAffx.2442.1.S1_x_at1/114+27395681..27398906SBP domain containing protein, expressed
LOC_Os04g46600Os.52058.1.S1_at11/114+27408383..27409169expressed protein
LOC_Os04g46610Os.17614.1.S1_at9/114+27414084..27418814PAP_fibrillin family protein, expressed
LOC_Os04g46610Os.27299.1.A1_at1/114+27414084..27418814PAP_fibrillin family protein, expressed
LOC_Os04g46620Os.22700.1.S1_at11/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46620Os.57487.1.S1_x_at6/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46620Os.57487.1.S1_at2/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46630NANA4+27426521..27428347Beta-expansin 2 precursor, putative, expressed
LOC_Os04g46639NANA4+27429989..27430351hypothetical protein
LOC_Os04g46650Os.2403.1.S1_at10/114+27436573..27437986Beta-expansin 2 precursor, putative, expressed
LOC_Os04g46660Os.51142.1.S1_at11/114+27442456..27443739Cyclin, N-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17614.1.S1_at--117--7471Chr04:27415886..27415910 (25 bp)
GTGTGAACTCATCAGCTCATCACGA
LOC_Os04g46610
Os.17614.1.S1_at--304--311Chr04:27415817..27415841 (25 bp)
ATACCATTTCCTTCACCTTGAGATA
LOC_Os04g46610
Os.17614.1.S1_at--838--11Chr04:27415757..27415781 (25 bp)
ATTCTTTTGTAATAGCAGGCCCTCC
LOC_Os04g46610
Os.17614.1.S1_at--835--5291Chr04:27415700..27415724 (25 bp)
GAAGGCAAAGGCTCCCCATGTGAAA
LOC_Os04g46610
Os.17614.1.S1_at--200--8911Chr04:27415680..27415704 (25 bp)
TGAAAAAGGACGCTCCATGACCCTG
LOC_Os04g46610
Os.17614.1.S1_at--204--3831Chr04:27415658..27415682 (25 bp)
CTGCCATGTGTGGTCATCTGCGATT
LOC_Os04g46610
Os.17614.1.S1_at--719--471Chr04:27415643..27415667 (25 bp)
ATCTGCGATTTGGTGTCCCATGGAC
LOC_Os04g46610
Os.17614.1.S1_at--291--8811Chr04:27415608..27415632 (25 bp)
TGATTCCACCCTTCGAGTCTTAAAA
LOC_Os04g46610
Os.17614.1.S1_at--867--10451NONE
TTAAAAGCAATCCAAGCCGCCCGGA
NONE
Os.17614.1.S1_at--869--6391Chr04:27414212..27414236 (25 bp)
GATCGTGAGCAGATTTATCCTGCCA
LOC_Os04g46610
Os.17614.1.S1_at--130--191NONE
ATATTCCCTAACTCATCACAACCAT
NONE
Target Sequence 
GTGTGAACTCATCAGCTCATCACGAACCAGCATAGAATTATTTTTCTTAGTTTGCTTTTGTTTGTTTGGATACCATTTCC
TTCACCTTGAGATATTTGGTTAAGGTGGATTGAACTTAGTAATGAAGCAATTCTTTTGTAATAGCAGGCCCTCCCNTGAC
CAAGTACTGGAGCNACTTCAAAGGATAGAAGGCAAAGGCTCCCCATGTGAAAAAGGACGCTCCATGACCCTGCCATGTGT
GGTCATCTGCGATTTGGTGTCCCATGGACAGTGATGCACTGATTCCACCCTTCGAGTCTTAAAAGCAATCCAAGCCGCCC
GGATGGTAGCCAGCAGTCCAGCACCAAGAGCTCCNAAGACACGGCGGACCGAGCCAGCCGGAGGGAGGGGATGATTGAGA
CANCGGCCTCTGCGGCGACGACAGTGGATCGTGAGCAGATTTATCCTGCCACNGAGATAAGTACATTGTACTGCTNNCTC
CNTTTCAAAATATAGCTATTTTTAGNANNNTACTTTGTTCTAAAATAAAGCTATTTCTTCATCNATATTCCCTAACTCAT
CACAACCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis