Browse Element(s) Details


Os.57487.1.S1_x_at

Description gb:D17782.1
DB_XREF= gi:455498
TID=Os.57487.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57487 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for T complex polypeptide, partial sequence
DEF=Rice mRNA for T complex polypeptide, partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g466206/11T-complex protein 1, alpha subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46580Os.52683.1.S1_at9/114+27395681..27398906SBP domain containing protein, expressed
LOC_Os04g46580OsAffx.2442.1.S1_x_at1/114+27395681..27398906SBP domain containing protein, expressed
LOC_Os04g46600Os.52058.1.S1_at11/114+27408383..27409169expressed protein
LOC_Os04g46610Os.17614.1.S1_at9/114+27414084..27418814PAP_fibrillin family protein, expressed
LOC_Os04g46610Os.27299.1.A1_at1/114+27414084..27418814PAP_fibrillin family protein, expressed
LOC_Os04g46620Os.22700.1.S1_at11/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46620Os.57487.1.S1_x_at6/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46620Os.57487.1.S1_at2/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46630NANA4+27426521..27428347Beta-expansin 2 precursor, putative, expressed
LOC_Os04g46639NANA4+27429989..27430351hypothetical protein
LOC_Os04g46650Os.2403.1.S1_at10/114+27436573..27437986Beta-expansin 2 precursor, putative, expressed
LOC_Os04g46660Os.51142.1.S1_at11/114+27442456..27443739Cyclin, N-terminal domain containing protein, expressed
LOC_Os04g46670Os.52858.1.S1_at10/114+27446934..27449189Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57487.1.S1_x_at--311--1611Chr04:27423370..27423394 (25 bp)
AGCTGCATTGTCTGTATACTTGGAG
LOC_Os04g46620
Os.57487.1.S1_x_at--289--8551Chr04:27423390..27423414 (25 bp)
TGGAGAATCTTGCTACAACCCTTGG
LOC_Os04g46620
Os.57487.1.S1_x_at--630--10831NONE
TTGGTCCAGGGAACAGTTGGCCATT
NONE
Os.57487.1.S1_x_at--673--6611Chr04:27423427..27423451 (25 bp)
GTTGGCCATTGCTGAATTCGCGGAA
LOC_Os04g46620
Os.57487.1.S1_x_at--305--2911Chr04:27423550..27423573 (24 bp)
AAGGTTCTTTCTGTCAATGCTGCAA
LOC_Os04g46620
Os.57487.1.S1_x_at--206--2691Chr04:27423597..27423621 (25 bp)
AAGCTTAGGGCATATCATCATACTG
LOC_Os04g46620
Os.57487.1.S1_x_at--817--1011Chr04:27424246..27424271 (25 bp)
AGGTATATTCGCAACAACCTTGAAT
LOC_Os04g46620
Os.57487.1.S1_x_at--644--1191NONE
AGTTTAGCACTGAGCGGCCATACTA
NONE
Os.57487.1.S1_x_at--812--8431NONE
GGCCATACTATCCTGAGGTTGATGA
NONE
Os.57487.1.S1_x_at--766--6311NONE
GATGACTGATCAACTTCCGAGGAAG
NONE
Os.57487.1.S1_x_at--983--8171NONE
GGAAGAGAGCCGGAACAAGAGTAAC
NONE
Target Sequence 
AGCTGCATTGTCTGTATACTTGGAGAATCTTGCTACAACCCTTGGTCCAGGGAACAGTTGGCCATTGCTGAATTCGCGGA
ATCTTTGTTAATCATTCCAAAGGTTCTTTCTGTCAATGCTGCAAAAGATGCAACTGAGCTTGTAGCAAAGCTTAGGGCAT
ATCATCATACTGCTCAAACAAAGGCTGATAACAACACTTTTCAAGCATGGGTCTTGACCTTTCAAAAGGTATATTCGCAA
CAACCTTGAATATGGGGTCATTGAGCCAGCAATGAGTAAAGTAAAGATATTCAGTTTAGCACTGAGCGGCCATACTATCC
TGAGGTTGATGACTGATCAACTTCCGAGGAAGAGAGCCGGAACAAGAGTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57487.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis