Browse Element(s) Details


Os.52058.1.S1_at

Description gb:AK064637.1
DB_XREF= gi:32974655
TID=Os.52058.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52058 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-A09, full insert sequence.
FL= gb:AK064637.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4660011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46560Os.23248.1.A1_at11/114+27386071..27389250Malate dehydrogenase, cytoplasmic, putative, expressed
LOC_Os04g46570Os.11799.1.S1_a_at11/114+27389328..27393393growth regulator like protein, putative, expressed
LOC_Os04g46580Os.52683.1.S1_at9/114+27395681..27398906SBP domain containing protein, expressed
LOC_Os04g46580OsAffx.2442.1.S1_x_at1/114+27395681..27398906SBP domain containing protein, expressed
LOC_Os04g46600Os.52058.1.S1_at11/114+27408383..27409169expressed protein
LOC_Os04g46610Os.17614.1.S1_at9/114+27414084..27418814PAP_fibrillin family protein, expressed
LOC_Os04g46610Os.27299.1.A1_at1/114+27414084..27418814PAP_fibrillin family protein, expressed
LOC_Os04g46620Os.22700.1.S1_at11/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46620Os.57487.1.S1_x_at6/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46620Os.57487.1.S1_at2/114+27418970..27424764T-complex protein 1, alpha subunit, putative, expressed
LOC_Os04g46630NANA4+27426521..27428347Beta-expansin 2 precursor, putative, expressed
LOC_Os04g46639NANA4+27429989..27430351hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52058.1.S1_at--86--3751Chr04:27408810..27408831 (22 bp)
CTCATACTGCACGAACTACTACGGT
LOC_Os04g46600
Os.52058.1.S1_at--272--8191Chr04:27408680..27408704 (25 bp)
GGAAGCCAGGAGTCATCCACGACGA
LOC_Os04g46600
Os.52058.1.S1_at--732--4251Chr04:27408571..27408595 (25 bp)
CCGGCCGAAGGTACAAGCTGCTCAA
LOC_Os04g46600
Os.52058.1.S1_at--278--3211Chr04:27408549..27408573 (25 bp)
CAAGGACGTCTTGTGTTAGTTTGTT
LOC_Os04g46600
Os.52058.1.S1_at--491--8771Chr04:27408528..27408552 (25 bp)
TGTTTGTTTAGGTCACCCATGCCGT
LOC_Os04g46600
Os.52058.1.S1_at--617--311Chr04:27408510..27408534 (25 bp)
ATGCCGTCACCCAGTACTAGTCGTC
LOC_Os04g46600
Os.52058.1.S1_at--656--2031Chr04:27408495..27408519 (25 bp)
ACTAGTCGTCATCGCTTAGGCTATA
LOC_Os04g46600
Os.52058.1.S1_at--1128--231Chr04:27408473..27408497 (25 bp)
ATATAGACTCGTTAGCTAGCCGCTA
LOC_Os04g46600
Os.52058.1.S1_at--659--1571Chr04:27408460..27408484 (25 bp)
AGCTAGCCGCTAGTTTGATGATCGA
LOC_Os04g46600
Os.52058.1.S1_at--1113--4051Chr04:27408438..27408462 (25 bp)
CGATGTGCATATACTACGTGCGTAC
LOC_Os04g46600
Os.52058.1.S1_at--819--2011Chr04:27408426..27408450 (25 bp)
ACTACGTGCGTACTCCATATTGTAT
LOC_Os04g46600
Target Sequence 
CTCATACTGCACGAACTACTACGGTGACGCGGCGCCCGCCCCGGCCGGCGCCGACATGTGCGACTGGTGCCTGAGCGACG
TCGCCGGGAAGGCGAGGTACTCGTCGGCGGCCGGGAAGCAGCAGGGCGCCGGAAGCCAGGAGTCATCCACGACGACGTCG
AGCTCCTCCGCCGGAAGGGGTGGCGGCGGCAAGCCCGGCGCCGGCGAGCAGGAGAGCGGGCGGCGGGGGACCAAGGCGGC
CGGCCGAAGGTACAAGCTGCTCAAGGACGTCTTGTGTTAGTTTGTTTGTTTAGGTCACCCATGCCGTCACCCAGTACTAG
TCGTCATCGCTTAGGCTATATAGACTCGTTAGCTAGCCGCTAGTTTGATGATCGATGTGCATATACTACGTGCGTACTCC
ATATTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52058.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis