Browse Element(s) Details


Os.52445.1.S1_at

Description gb:AK067182.1
DB_XREF= gi:32977200
TID=Os.52445.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52445 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095P22, full insert sequence.
FL= gb:AK067182.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4674011/11Pectinesterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46690OsAffx.26141.2.S1_at11/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.4.S1_at9/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.3.S1_x_at7/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.4.S1_x_at6/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.38172.1.S1_x_at5/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.43567.1.S1_x_at3/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.53217.1.S1_x_at1/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.29987.1.S1_at1/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46700Os.24315.1.S2_at11/114+27471768..27475152expressed protein
LOC_Os04g46700Os.24315.1.S1_at11/114+27471768..27475152expressed protein
LOC_Os04g46710OsAffx.26487.1.S1_at11/114+27475404..27477180thioesterase family protein
LOC_Os04g46720NANA4+27480036..27480548transposon protein, putative, unclassified
LOC_Os04g46730OsAffx.26488.1.S1_at10/114+27481949..27483552Pollen thioesterase, putative, expressed
LOC_Os04g46740Os.52445.1.S1_at11/114+27487575..27489753Pectinesterase family protein, expressed
LOC_Os04g46750Os.17642.1.S1_a_at11/114+27501008..27506010Glycogenin, putative, expressed
LOC_Os04g46760OsAffx.26489.1.S1_at11/114+27507233..27509399trehalose-phosphatase family protein
LOC_Os04g46770OsAffx.8513.1.S1_s_at1/114+27511493..27511961transposon protein, putative, unclassified
LOC_Os04g46770OsAffx.10756.1.S1_x_at1/114+27511493..27511961transposon protein, putative, unclassified
LOC_Os04g46780Os.52343.1.S1_at11/114+27513652..27516700MSP domain containing protein, expressed
LOC_Os04g46780Os.51114.1.S1_x_at9/114+27513652..27516700MSP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005618cellular_componentcell wall
GO:0005737cellular_componentcytoplasm
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52445.1.S1_at--173--791Chr04:27488242..27488266 (25 bp)
ATGGGCCAGTACTCGCGGATCGTCT
LOC_Os04g46740
Os.52445.1.S1_at--1152--2451Chr04:27488030..27488176 (25 bp)
AACAAGAGCATGACGGCGTTCTTCG
LOC_Os04g46740
Os.52445.1.S1_at--622--4631Chr04:27488015..27488039 (25 bp)
GCGTTCTTCGGGATGTACAGGAACT
LOC_Os04g46740
Os.52445.1.S1_at--1034--2771Chr04:27487910..27487934 (25 bp)
AAGAGCTTCGTCAACGGATTCCACT
LOC_Os04g46740
Os.52445.1.S1_at--124--7911Chr04:27487895..27487919 (25 bp)
GGATTCCACTGGCTTACACCTGACG
LOC_Os04g46740
Os.52445.1.S1_at--914--9831Chr04:27487881..27487905 (25 bp)
TACACCTGACGTCTGAAAGCCGTTT
LOC_Os04g46740
Os.52445.1.S1_at--805--5551Chr04:27487867..27487891 (25 bp)
GAAAGCCGTTTTTCGGCACCACAAT
LOC_Os04g46740
Os.52445.1.S1_at--887--9991Chr04:27487742..27487766 (25 bp)
TAGCGGTAGATTCATTCGTTCATTC
LOC_Os04g46740
Os.52445.1.S1_at--882--9391Chr04:27487719..27487743 (25 bp)
TCGTTTTGTCTGATCCGGCTTATAA
LOC_Os04g46740
Os.52445.1.S1_at--889--5211Chr04:27487680..27487704 (25 bp)
GAATTCAAGCACAGCTCTTTACAAG
LOC_Os04g46740
Os.52445.1.S1_at--110--7132Chr01:32708588..32708608 (21 bp)
GTCATGTAGACATGTACCCATGCAT
NONE
Target Sequence 
ATGGGCCAGTACTCGCGGATCGTCTACGCCTACACCTACTTCGACAGCGTCATCGCCCCCGGCGGCTGGGACGACTGGGA
CCACGCCAGCAACAAGAGCATGACGGCGTTCTTCGGGATGTACAGGAACTGGGGGCCCGGCGCCGACGCGGTGCACGGCG
TGCNCGTGGGCGCGGGAGCTCGACTACTTCGCCGCGCGCCCCTTCCTCGGCAAGAGCTTCGTCAACGGATTCCACTGGCT
TACACCTGACGTCTGAAAGCCGTTTTTCGGCACCACAATTAATTTACTGGAGACAAGAACGTACATTTGTTAGTACAGCA
AAAGCGAAGAATAGAACATTACGATAAATATAAAGTATTGAAGTGACTAGTGCAGTATATAGCGGTAGATTCATTCGTTC
ATTCGTTTTGTCTGATCCGGCTTATAATGATAGCTGCTATAGAATTCAAGCACAGCTCTTTACAAGATCTATAGTAGCTA
TGTAGTACTGTTTTAAAAGCTTTGTCATGTAGACATGTACCCATGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis