Browse Element(s) Details


OsAffx.26489.1.S1_at

Description tigr:9632.m04509
TID=OsAffx.26489.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=trehalose-phosphatase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4676011/11trehalose-phosphatase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46730OsAffx.26488.1.S1_at10/114+27481949..27483552Pollen thioesterase, putative, expressed
LOC_Os04g46740Os.52445.1.S1_at11/114+27487575..27489753Pectinesterase family protein, expressed
LOC_Os04g46750Os.17642.1.S1_a_at11/114+27501008..27506010Glycogenin, putative, expressed
LOC_Os04g46760OsAffx.26489.1.S1_at11/114+27507233..27509399trehalose-phosphatase family protein
LOC_Os04g46770OsAffx.8513.1.S1_s_at1/114+27511493..27511961transposon protein, putative, unclassified
LOC_Os04g46770OsAffx.10756.1.S1_x_at1/114+27511493..27511961transposon protein, putative, unclassified
LOC_Os04g46780Os.52343.1.S1_at11/114+27513652..27516700MSP domain containing protein, expressed
LOC_Os04g46780Os.51114.1.S1_x_at9/114+27513652..27516700MSP domain containing protein, expressed
LOC_Os04g46790OsAffx.26490.1.S1_at11/114+27517388..27518059hypothetical protein
LOC_Os04g46800NANA4+27519131..27519412hypothetical protein
LOC_Os04g46810Os.47380.1.S1_at11/114+27520967..27521716Cortical cell delineating protein precursor, putative, expressed
LOC_Os04g46820NANA4+27524246..27524641Cortical cell delineating protein precursor, putative
LOC_Os04g46830OsAffx.26492.1.S1_at11/114+27534287..27535141Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os04g46830OsAffx.26492.1.S1_s_at11/114+27534287..27535141Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0004805molecular_functiontrehalose-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26489.1.S1_at--798--8131Chr04:27508335..27508359 (25 bp)
GGACATACTAGCATCTTTTGCAGAT
LOC_Os04g46760
OsAffx.26489.1.S1_at--350--6151Chr04:27508002..27508025 (24 bp)
GAGGTTTCCAAATCCCTGATAGAGG
LOC_Os04g46760
OsAffx.26489.1.S1_at--256--2831Chr04:27507939..27507963 (25 bp)
AAGTTTTGCGTATCTGTTCATTATC
LOC_Os04g46760
OsAffx.26489.1.S1_at--465--10851Chr04:27507762..27507786 (25 bp)
TTGGTCGCACAGGTTGTCAACAATG
LOC_Os04g46760
OsAffx.26489.1.S1_at--847--2351Chr04:27507565..27507589 (25 bp)
AAAGCCGTCGAGTTTTTGCTTCGAT
LOC_Os04g46760
OsAffx.26489.1.S1_at--431--10731Chr04:27507550..27507574 (25 bp)
TTGCTTCGATCGCTTGAGCTAGATG
LOC_Os04g46760
OsAffx.26489.1.S1_at--815--6571Chr04:27507526..27507550 (25 bp)
GATTCTGAAACTGTTCTTCCTATCT
LOC_Os04g46760
OsAffx.26489.1.S1_at--47--6331Chr04:27507373..27507499 (25 bp)
GATGCATTCAAGGTGCTTCGCGAGC
LOC_Os04g46760
OsAffx.26489.1.S1_at--710--7931Chr04:27507333..27507357 (25 bp)
GGATTCTTGTTTCGCAGGTGCCCAA
LOC_Os04g46760
OsAffx.26489.1.S1_at--1124--7771Chr04:27507317..27507341 (25 bp)
GGTGCCCAAGAAGTCTGAAGCCTTT
LOC_Os04g46760
OsAffx.26489.1.S1_at--793--10071Chr04:27507267..27507291 (25 bp)
TAGTGATCCTTCCTGTCATGCTTAA
LOC_Os04g46760
Target Sequence 
GGACATACTAGCATCTTTTGCAGATTCAGACAGTACCATAGAAAAGACCAAAGAAACCAAGCTTTTTCAACCTGCAAATG
AGTTTCTGACTATGATAACTGAGGTTTCCAAATCCCTGATAGAGGTCACTAAAGCGATTAAGGGTGCAACAGTTGAGAAC
AACAAGTTTTGCGTATCTGTTCATTATCGTAATGTCGACAAGAAGAACTGGAAGTTGGTCGCACAGGTTGTCAACAATGT
TCTAAAAGATTTTCCTAGTCTTAAAGTATCCACTGGACGGAAGGTTTTAGAGGTTCGTCCAATGATCAACTGGGACAAGG
GAAAAGCCGTCGAGTTTTTGCTTCGATCGCTTGAGCTAGATGATTCTGAAACTGTTCTTCCTATCTATATTGGGGATGAT
AAAACGGATGAAGATGCATTCAAGGTGCTTCGCGAGCGAAAGAATGGATGTGGGATTCTTGTTTCGCAGGTGCCCAAGAA
GTCTGAAGCCTTTTTCATGCTGAGAGGCCCATCAGAAGTAGTGATCCTTCCTGTCATGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26489.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis