Browse Element(s) Details


Os.17642.1.S1_a_at

Description gb:AK067441.1
DB_XREF= gi:32977459
TID=Os.17642.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.17642 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023072I01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100E18, full insert sequence.
FL= gb:AK068076.1 gb:AK067441.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4675011/11Glycogenin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46710OsAffx.26487.1.S1_at11/114+27475404..27477180thioesterase family protein
LOC_Os04g46720NANA4+27480036..27480548transposon protein, putative, unclassified
LOC_Os04g46730OsAffx.26488.1.S1_at10/114+27481949..27483552Pollen thioesterase, putative, expressed
LOC_Os04g46740Os.52445.1.S1_at11/114+27487575..27489753Pectinesterase family protein, expressed
LOC_Os04g46750Os.17642.1.S1_a_at11/114+27501008..27506010Glycogenin, putative, expressed
LOC_Os04g46760OsAffx.26489.1.S1_at11/114+27507233..27509399trehalose-phosphatase family protein
LOC_Os04g46770OsAffx.8513.1.S1_s_at1/114+27511493..27511961transposon protein, putative, unclassified
LOC_Os04g46770OsAffx.10756.1.S1_x_at1/114+27511493..27511961transposon protein, putative, unclassified
LOC_Os04g46780Os.52343.1.S1_at11/114+27513652..27516700MSP domain containing protein, expressed
LOC_Os04g46780Os.51114.1.S1_x_at9/114+27513652..27516700MSP domain containing protein, expressed
LOC_Os04g46790OsAffx.26490.1.S1_at11/114+27517388..27518059hypothetical protein
LOC_Os04g46800NANA4+27519131..27519412hypothetical protein
LOC_Os04g46810Os.47380.1.S1_at11/114+27520967..27521716Cortical cell delineating protein precursor, putative, expressed
LOC_Os04g46820NANA4+27524246..27524641Cortical cell delineating protein precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17642.1.S1_a_at--940--491Chr04:27501574..27501598 (25 bp)
ATCGGTGCTCTCTTCGTGATGGCAT
LOC_Os04g46750
Os.17642.1.S1_a_at--572--831Chr04:27501556..27501580 (25 bp)
ATGGCATTCCCATGGTATTTAAACG
LOC_Os04g46750
Os.17642.1.S1_a_at--1100--9771Chr04:27501525..27501549 (25 bp)
TAAGGGCCTTGGCAGTGTTCGCCTA
LOC_Os04g46750
Os.17642.1.S1_a_at--833--1111Chr04:27501512..27501536 (25 bp)
AGTGTTCGCCTATGCATTTTGCTGC
LOC_Os04g46750
Os.17642.1.S1_a_at--667--1591Chr04:27501451..27501475 (25 bp)
AGCTCCTTGCAGATCCTGATTGAAA
LOC_Os04g46750
Os.17642.1.S1_a_at--978--7351Chr04:27501408..27501432 (25 bp)
GTGAACCTAACCAGACAGCCGAGTT
LOC_Os04g46750
Os.17642.1.S1_a_at--213--5651Chr04:27501395..27501419 (25 bp)
GACAGCCGAGTTCACGAAGCTTTAT
LOC_Os04g46750
Os.17642.1.S1_a_at--1086--4811Chr04:27501330..27501354 (25 bp)
GCTAATTCCGATTCGCATTGGCTAT
LOC_Os04g46750
Os.17642.1.S1_a_at--861--2531Chr04:27501264..27501288 (25 bp)
AACTACAGTTGCACCTTTAACACCA
LOC_Os04g46750
Os.17642.1.S1_a_at--404--8071Chr04:27501227..27501251 (25 bp)
GGAGCCCGTGATATTCTTCGTAATT
LOC_Os04g46750
Os.17642.1.S1_a_at--629--3271Chr04:27501061..27501085 (25 bp)
CAACACATTCTTGGCTTTCTTGTAA
LOC_Os04g46750
Target Sequence 
ATCGGTGCTCTCTTCGTGATGGCATTCCCATGGTATTTAAACGGTGTTGTAAGGGCCTTGGCAGTGTTCGCCTATGCATT
TTGCTGCGCTCCCTTGATCTGGGGATCTTTGGTTAAGACAATGAGCTCCTTGCAGATCCTGATTGAAAGGGATGCATTCA
GACTTGGTGAACCTAACCAGACAGCCGAGTTCACGAAGCTTTATTGAGGTGTGTATTGCAGATACATGTCATTGCATTTC
ATCAGCTAATTCCGATTCGCATTGGCTATTNTGATGGCCAATTCAGTTGTACAAGTAAAACCGCAGATGAAACTACAGTT
GCACCTTTAACACCACCTGAAACNTTTGGAGCCCGTGATATTCTTCGTAATTGCGTAGGTGACATACAGGGCAAAGGGAG
AGAACATAGTTTGATGTTTGTGTGTGGGGGGTGTTGGTTGTGGAAGTGGAACTGCAGAGGAACATTATAGAGTAATTTTT
TTGTTACTTCATTTACTGNTCCTCTAAAAGAGCCAACACATTCTTGGCTTTCTTGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17642.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis