Browse Element(s) Details


Os.53049.1.S1_at

Description gb:AK070602.1
DB_XREF= gi:32980626
TID=Os.53049.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53049 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023055O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055O11, full insert sequence.
FL= gb:AK070602.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4649011/11Major intrinsic protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46450Os.15343.1.S1_at10/114+27332264..27340546Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g46460Os.26493.1.S1_a_at11/114+27344135..27347489Acetylglutamate kinase, putative, expressed
LOC_Os04g46470Os.56287.1.S1_at10/114+27348729..27351393dioxygenase, putative, expressed
LOC_Os04g46480Os.7470.1.S1_at11/114+27351357..27353621expressed protein
LOC_Os04g46490Os.53049.1.S1_at11/114+27356566..27357899Major intrinsic protein, expressed
LOC_Os04g46500NANA4+27363235..27365489retrotransposon protein, putative, unclassified
LOC_Os04g46510NANA4+27366326..27369025retrotransposon protein, putative, unclassified
LOC_Os04g46520NANA4+27369647..27371087retrotransposon protein, putative, unclassified
LOC_Os04g46530Os.10263.1.S1_at1/114+27373144..27377055Major intrinsic protein, expressed
LOC_Os04g46540OsAffx.14301.1.S1_at11/114+27377842..27378513hypothetical protein
LOC_Os04g46550OsAffx.14302.1.S1_at11/114+27380324..27381041hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0016020cellular_componentmembrane
GO:0015200molecular_functionmethylammonium transporter activity
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53049.1.S1_at--560--10811Chr04:27356990..27357014 (25 bp)
TTGTCAGCGGGCACTACAGCAACCA
LOC_Os04g46490
Os.53049.1.S1_at--879--2011Chr04:27356978..27357002 (25 bp)
ACTACAGCAACCAGGCCGTGTACTG
LOC_Os04g46490
Os.53049.1.S1_at--16--8411Chr04:27356923..27356947 (25 bp)
GGCGCTGGTGCATCAAGCCCTGGTC
LOC_Os04g46490
Os.53049.1.S1_at--600--2171Chr04:27356830..27356854 (25 bp)
AACGGTGGTCGTGTGATGAAATCAT
LOC_Os04g46490
Os.53049.1.S1_at--469--2271Chr04:27356812..27356836 (25 bp)
AAATCATTCTGGCAGTCTGTCACCC
LOC_Os04g46490
Os.53049.1.S1_at--694--8731Chr04:27356795..27356819 (25 bp)
TGTCACCCTGACGAAAAATCTTTGT
LOC_Os04g46490
Os.53049.1.S1_at--994--7191Chr04:27356768..27356792 (25 bp)
GTCGTGTTAGAATCTTTGTTGCATT
LOC_Os04g46490
Os.53049.1.S1_at--61--6671Chr04:27356751..27356775 (25 bp)
GTTGCATTTGGTTTCGTGTAGTTAC
LOC_Os04g46490
Os.53049.1.S1_at--553--8251Chr04:27356637..27356661 (25 bp)
GGCAGTTTGATCCTAGTGAATTGTG
LOC_Os04g46490
Os.53049.1.S1_at--317--8811Chr04:27356590..27356614 (25 bp)
TAGTACTTTTGTTAATGGGCTTCCT
LOC_Os04g46490
Os.53049.1.S1_at--723--7591Chr04:27356574..27356598 (25 bp)
GGGCTTCCTTTGATCTAAAATATAG
LOC_Os04g46490
Target Sequence 
TTGTCAGCGGGCACTACAGCAACCAGGCCGTGTACTGGGCCGGCCCGATGGTCGGCGCGGCGGTGGCGGCGCTGGTGCAT
CAAGCCCTGGTCTTCCCGACCGTGCCGGAGCCGGCGCCGGCGCCGGCGACGAACGAGTCGGCGCGCCATGGGAGCGTGCA
AACGGTGGTCGTGTGATGAAATCATTCTGGCAGTCTGTCACCCTGACGAAAAATCTTTGTTTGTCGTGTTAGAATCTTTG
TTGCATTTGGTTTCGTGTAGTTACATGTAGTATGTGTGTAAGATCTGTGTCTTTATTAGGTTGTGGATTTGTGGATGTTT
GAAGGAAAGAAAGCAATGTAATCTAGTATAGTAGGCAGTTTGATCCTAGTGAATTGTGATGGACTAATGGATGGTTTGGG
TAGTACTTTTGTTAATGGGCTTCCTTTGATCTAAAATATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis