Browse Element(s) Details


Os.56287.1.S1_at

Description gb:AK109771.1
DB_XREF= gi:32994980
TID=Os.56287.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56287 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-A08, full insert sequence.
FL= gb:AK109771.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4647010/11dioxygenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46450Os.15343.1.S1_at10/114+27332264..27340546Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g46460Os.26493.1.S1_a_at11/114+27344135..27347489Acetylglutamate kinase, putative, expressed
LOC_Os04g46470Os.56287.1.S1_at10/114+27348729..27351393dioxygenase, putative, expressed
LOC_Os04g46480Os.7470.1.S1_at11/114+27351357..27353621expressed protein
LOC_Os04g46490Os.53049.1.S1_at11/114+27356566..27357899Major intrinsic protein, expressed
LOC_Os04g46500NANA4+27363235..27365489retrotransposon protein, putative, unclassified
LOC_Os04g46510NANA4+27366326..27369025retrotransposon protein, putative, unclassified
LOC_Os04g46520NANA4+27369647..27371087retrotransposon protein, putative, unclassified
LOC_Os04g46530Os.10263.1.S1_at1/114+27373144..27377055Major intrinsic protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56287.1.S1_at--752--7311Chr04:27350647..27350671 (25 bp)
GTGCTCAGTCAGGAGGCTGTCCGAT
LOC_Os04g46470
Os.56287.1.S1_at--1148--10631Chr04:27350693..27350717 (25 bp)
TTCCCGGCGATAAACCCAAGCTACG
LOC_Os04g46470
Os.56287.1.S1_at--599--4391Chr04:27350717..27350741 (25 bp)
GCCAACCAGAGGAACCGGTTCGTCT
LOC_Os04g46470
Os.56287.1.S1_at--312--4011Chr04:27350778..27350802 (25 bp)
CGTACTTCCCGTTCGACAGCGTGGT
LOC_Os04g46470
Os.56287.1.S1_at--665--2891Chr04:27350804..27350828 (25 bp)
AAGGTCGACGTCTCCGATGGATCGG
LOC_Os04g46470
Os.56287.1.S1_at--489--811Chr04:27350901..27350925 (25 bp)
ATGGTGGCTATGTTCTTCTTGTAGA
LOC_Os04g46470
Os.56287.1.S1_at--159--6091Chr04:27351049..27351072 (24 bp)
GAGTATGCAGTCTCCAAGCACAGAT
LOC_Os04g46470
Os.56287.1.S1_at--469--3431NONE
CAGATGCCGTCTAGTGGTGCTGGAT
NONE
Os.56287.1.S1_at--404--2751Chr04:27351144..27351168 (25 bp)
AAGAACCTCACTTTTCCAATGGGAT
LOC_Os04g46470
Os.56287.1.S1_at--623--5951Chr04:27351200..27351224 (25 bp)
GAGCAAGCATCAGATCCAGTCTAAC
LOC_Os04g46470
Os.56287.1.S1_at--704--3231Chr04:27351251..27351275 (25 bp)
CAAGAATTTTGCCTCGTGTATTGAT
LOC_Os04g46470
Target Sequence 
GTGCTCAGTCAGGAGGCTGTCCGATCAGCACGCCAGGCCGGCGGACTTCCCGGCGATAAACCCAAGCTACGCCAACCAGA
GGAACCGGTTCGTCTACGCCGGCGCCGCGTCCGGCTCCCGCAGATTCCTCCCGTACTTCCCGTTCGACAGCGTGGTGAAG
GTCGACGTCTCCGATGGATCGGCGCGGTGGTGGTCTACCGACGGGCGCAAGTTCGTCGGCGAGCCGGTCTTCGTCCCGAC
CGGCGGCGGAGAGGATGGTGGCTATGTTCTTCTTGTAGAGTATGCAGTCTCCAAGCACAGATGCCGTCTAGTGGTGCTGG
ATGCAAAGAAGATAGGGACAGAGAATGCACTTGTGGCAAAACTAGAGGTGCCAAAGAACCTCACTTTTCCAATGGGATTC
CATGGTTTCTGGGGAGATGAATGAGCATAGAGCAAGCATCAGATCCAGTCTAACTCTGGAGAGAAATTGTCTTGAAAAGG
CAAGAATTTTGCCTCGTGTATTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis