Browse Element(s) Details


Os.26493.1.S1_a_at

Description gb:AK070256.1
DB_XREF= gi:32980280
TID=Os.26493.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26493 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-209-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023043F24, full insert sequence.
FL= gb:AK071756.1 gb:AK104439.1 gb:AK070256.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4646011/11Acetylglutamate kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46440Os.55643.1.S1_at11/114+27320783..27321770DRE binding factor 2, putative, expressed
LOC_Os04g46450Os.15343.1.S1_at10/114+27332264..27340546Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g46460Os.26493.1.S1_a_at11/114+27344135..27347489Acetylglutamate kinase, putative, expressed
LOC_Os04g46470Os.56287.1.S1_at10/114+27348729..27351393dioxygenase, putative, expressed
LOC_Os04g46480Os.7470.1.S1_at11/114+27351357..27353621expressed protein
LOC_Os04g46490Os.53049.1.S1_at11/114+27356566..27357899Major intrinsic protein, expressed
LOC_Os04g46500NANA4+27363235..27365489retrotransposon protein, putative, unclassified
LOC_Os04g46510NANA4+27366326..27369025retrotransposon protein, putative, unclassified
LOC_Os04g46520NANA4+27369647..27371087retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006526biological_processarginine biosynthesis
GO:0003991molecular_functionacetylglutamate kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26493.1.S1_a_at--524--1611Chr04:27345050..27345074 (25 bp)
AGCTGTTGCTGCTCACAGATGTGTC
LOC_Os04g46460
Os.26493.1.S1_a_at--1060--6251Chr04:27345067..27345091 (25 bp)
GATGTGTCTGGAATTCTGGCCGACC
LOC_Os04g46460
Os.26493.1.S1_a_at--1106--8191Chr04:27345076..27345100 (25 bp)
GGAATTCTGGCCGACCGTAATGACC
LOC_Os04g46460
Os.26493.1.S1_a_at--32--2851Chr04:27345094..27345118 (25 bp)
AATGACCCCGGGAGTCTGGTGAAAG
LOC_Os04g46460
Os.26493.1.S1_a_at--592--311Chr04:27345178..27345202 (25 bp)
ATACCGAAGGTGGAATGCTGCGTGC
LOC_Os04g46460
Os.26493.1.S1_a_at--306--1091Chr04:27345215..27345239 (25 bp)
AGGGCGTGCACACTGCAAGCATCAT
LOC_Os04g46460
Os.26493.1.S1_a_at--656--2711Chr04:27345231..27345255 (25 bp)
AAGCATCATCGATGGGCGTGTCCCG
LOC_Os04g46460
Os.26493.1.S1_a_at--1131--6671Chr04:27345261..27345285 (25 bp)
GTTGCTGCTCGAGATTCTCACAGAT
LOC_Os04g46460
Os.26493.1.S1_a_at--465--9531Chr04:27345276..27345300 (25 bp)
TCTCACAGATGAGGGCACTGGCACT
LOC_Os04g46460
Os.26493.1.S1_a_at--571--3331Chr04:27345291..27345315 (25 bp)
CACTGGCACTATGATCACTGGCTGA
LOC_Os04g46460
Os.26493.1.S1_a_at--667--1951Chr04:27345307..27345331 (25 bp)
ACTGGCTGAGGTGATTCATCCCGTC
LOC_Os04g46460
Target Sequence 
AGCTGTTGCTGCTCACAGATGTGTCTGGAATTCTGGCCGACCGTAATGACCCCGGGAGTCTGGTGAAAGAGATCGACATT
GCTGGGGTGCGGCAGATGGTGGCCGACGGGCAGGTAGCTGGTGGGATGATACCGAAGGTGGAATGCTGCGTGCGTGCCCT
CGCACAGGGCGTGCACACTGCAAGCATCATCGATGGGCGTGTCCCGCACTCGTTGCTGCTCGAGATTCTCACAGATGAGG
GCACTGGCACTATGATCACTGGCTGAGGTGATTCATCCCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26493.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis