Browse Element(s) Details


Os.15343.1.S1_at

Description gb:AK067475.1
DB_XREF= gi:32977493
TID=Os.15343.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15343 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013104C20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013104C20, full insert sequence.
FL= gb:AK067475.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4645010/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46430OsAffx.26637.1.S1_x_at4/114+27310208..27311194hypothetical protein
LOC_Os04g46430OsAffx.26637.2.S1_x_at2/114+27310208..27311194hypothetical protein
LOC_Os04g46440Os.55643.1.S1_at11/114+27320783..27321770DRE binding factor 2, putative, expressed
LOC_Os04g46450Os.15343.1.S1_at10/114+27332264..27340546Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g46460Os.26493.1.S1_a_at11/114+27344135..27347489Acetylglutamate kinase, putative, expressed
LOC_Os04g46470Os.56287.1.S1_at10/114+27348729..27351393dioxygenase, putative, expressed
LOC_Os04g46480Os.7470.1.S1_at11/114+27351357..27353621expressed protein
LOC_Os04g46490Os.53049.1.S1_at11/114+27356566..27357899Major intrinsic protein, expressed
LOC_Os04g46500NANA4+27363235..27365489retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15343.1.S1_at--513--3071Chr04:27332818..27332842 (25 bp)
AATCAGTGCATACAGAAGTCCCTTG
LOC_Os04g46450
Os.15343.1.S1_at--263--1151Chr04:27332802..27332826 (25 bp)
AGTCCCTTGGGAACCGACAGAGGAG
LOC_Os04g46450
Os.15343.1.S1_at--158--6031Chr04:27332780..27332804 (25 bp)
GAGATGTCCTTCATGTAGCTTGAGT
LOC_Os04g46450
Os.15343.1.S1_at--1094--7571Chr04:27332751..27332775 (25 bp)
GGGCTAATGACGTGAAACCTATCTA
LOC_Os04g46450
Os.15343.1.S1_at--1001--6891Chr04:27332700..27332724 (25 bp)
GTATCGCAGGCATCTAGATCAAGCT
LOC_Os04g46450
Os.15343.1.S1_at--512--4851Chr04:27332678..27332702 (25 bp)
GCTACTTTGATGGTCATTACTTGGT
LOC_Os04g46450
Os.15343.1.S1_at--745--6331Chr04:27332527..27332551 (25 bp)
GATGCTAATGTTTATTCCTGCTCCC
LOC_Os04g46450
Os.15343.1.S1_at--1103--6851Chr04:27332500..27332524 (25 bp)
GTATAGTTCGGGATTCTCCTGGAGT
LOC_Os04g46450
Os.15343.1.S1_at--700--7171Chr04:27332457..27332481 (25 bp)
GTCTGACTTTTGCTATATCCATTCT
LOC_Os04g46450
Os.15343.1.S1_at--1116--7671Chr04:27332312..27332336 (25 bp)
GGGTTTTCCAGATTGTACATTTCAG
LOC_Os04g46450
Os.15343.1.S1_at--83--6631Chr04:27332263..27332287 (25 bp)
GTTGGATGCAGTTTGTTTGGTCTTA
NONE
Target Sequence 
AATCAGTGCATACAGAAGTCCCTTGGGAACCGACAGAGGAGATGTCCTTCATGTAGCTTGAGTTTTNGGGGCTAATGACG
TGAAACCTATCTACATATGAGGTTGTTAATTTCAAGATGGTATCGCAGGCATCTAGATCAAGCTACTTTGATGGTCATTA
CTTGGTCATATGGTTAGATGACCATGCGAGTTGAAGATATGACAAGTACTAGCTTGTACAACCNAACATATAAGCAGAAT
GTAGTAGCCTAATTTGGTTGGCTACATGGAATTGCNAGGTGTCNGGCATTCGTGATGCTAATGTTTATTCCTGCTCCCTT
GTATAGTTCGGGATTCTCCTGGAGTAGTTAAGTCGCTAGATTAGTCTGACTTTTGCTATATCCATTCTGTTCTTTTGGGG
AAAAAACATCCAACAAAAGGGGTGNTGCTTCCCGCCATACTGAAACNTTGTACCATATATAGCTTGTAGTTCCATTGTTG
TAGCAGACAATAAGAATGTAGGTTTTACNGGGTTTTCCAGATTGTACATTTCAGGAGATTGNCAATAGCGAAATNNCAGT
TGGATGCAGTTTGTTTGGTCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15343.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis