Browse Element(s) Details


Os.56682.1.S1_at

Description gb:AK110292.1
DB_XREF= gi:32995501
TID=Os.56682.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-163-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-163-G01, full insert sequence.
FL= gb:AK110292.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5094011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50910Os.48137.1.A1_at11/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910Os.49175.1.S1_at11/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910Os.24117.1.A1_at1/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910OsAffx.31869.4.S1_x_at1/116+30796115..30814785Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50920Os.53650.1.S1_at11/116+30816442..30822355protein kinase family protein, putative, expressed
LOC_Os06g50930Os.11287.1.S1_at11/116+30822453..30824784Senescence-associated protein DIN1, putative, expressed
LOC_Os06g50940Os.56682.1.S1_at11/116+30827275..30829400GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g50950Os.27247.1.S1_at11/116+30837055..30838936GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os06g50960Os.47341.1.A1_at11/116+30845362..30846881Pollen allergen family protein, expressed
LOC_Os06g50970OsAffx.28201.1.S1_s_at11/116+30847400..30849740expressed protein
LOC_Os06g50980OsAffx.28202.1.S1_at11/116+30854272..30855123hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56682.1.S1_at--895--10611Chr06:30827647..30827671 (25 bp)
TTCGTGTTCTGGGACAGCGTGCACC
LOC_Os06g50940
Os.56682.1.S1_at--378--9711Chr06:30827553..30827577 (25 bp)
TCAACTTCAACCAGCTCGCCAATTA
LOC_Os06g50940
Os.56682.1.S1_at--181--9331Chr06:30827538..30827562 (25 bp)
TCGCCAATTACAACAGCTGATGCTC
LOC_Os06g50940
Os.56682.1.S1_at--496--4751Chr06:30827523..30827547 (25 bp)
GCTGATGCTCATTTATTTATATATA
LOC_Os06g50940
Os.56682.1.S1_at--782--231Chr06:30827503..30827527 (25 bp)
ATATATTGCTTCTCATCGATGATAT
LOC_Os06g50940
Os.56682.1.S1_at--661--231Chr06:30827480..30827504 (25 bp)
ATATATACGTGGTCACTGATGTTCT
LOC_Os06g50940
Os.56682.1.S1_at--544--11Chr06:30827434..30827458 (25 bp)
CCTAGTTTTAGTCTTGGAATTTCAG
LOC_Os06g50940
Os.56682.1.S1_at--453--3591Chr06:30827395..30827419 (25 bp)
CATTCATGTATATACTGCTGTACAA
LOC_Os06g50940
Os.56682.1.S1_at--720--331Chr06:30827367..30827391 (25 bp)
ATACATGTTGCTCTATTCAGCTCGG
LOC_Os06g50940
Os.56682.1.S1_at--1117--4811Chr06:30827358..30827382 (25 bp)
GCTCTATTCAGCTCGGTTTGATTAT
LOC_Os06g50940
Os.56682.1.S1_at--1010--511Chr06:30827308..30827332 (25 bp)
ATCGATCCATCGTGGCTAGAGGCCA
LOC_Os06g50940
Target Sequence 
TTCGTGTTCTGGGACAGCGTGCACCCGTCGCAGCAGGCCAACAAGCTCGGCGCCAAGGCCTACTTCCACGGCCCTCCCCA
GTTCACCTCCCCCATCAACTTCAACCAGCTCGCCAATTACAACAGCTGATGCTCATTTATTTATATATATTGCTTCTCAT
CGATGATATATATACGTGGTCACTGATGTTCTTTCTTTCTTTCATGTTTTTTTCCTAGTTTTAGTCTTGGAATTTCAGTT
AAATTGATTCATCATTCATGTATATACTGCTGTACAATATATACATGTTGCTCTATTCAGCTCGGTTTGATTATGAGTAC
TGCAAATGGAAGTGTAATAATCGATCCATCGTGGCTAGAGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56682.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis