Browse Element(s) Details


Os.5679.1.S1_at

Description gb:AK109820.1
DB_XREF= gi:32995029
TID=Os.5679.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5679 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-A06, full insert sequence.
FL= gb:AK109820.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1192011/11Endonuclease/Exonuclease/phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11890Os.47463.1.S1_x_at4/116+6321150..6324870transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g11890Os.14491.2.S1_x_at4/116+6321150..6324870transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g11900OsAffx.15378.1.S1_at11/116+6332935..6333979hypothetical protein
LOC_Os06g11910Os.54099.1.S1_at11/116+6343014..6346602expressed protein
LOC_Os06g11920Os.5679.1.S1_at11/116+6348121..6351937Endonuclease/Exonuclease/phosphatase family protein, expressed
LOC_Os06g11930OsAffx.4805.1.S1_at11/116+6354146..6354982SNARE domain containing protein
LOC_Os06g11940OsAffx.27574.1.S1_at11/116+6357047..6357856AP2 domain containing protein, expressed
LOC_Os06g11950NANA6+6360090..6361250Zinc knuckle family protein
LOC_Os06g11960Os.16735.1.S1_at1/116+6368183..63696952,3-bisphosphoglycerate-dependent phosphoglycerate mutase, putative
LOC_Os06g11970Os.49822.1.S1_at11/116+6371354..6375375SRF-type transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5679.1.S1_at--794--8051Chr06:6348598..6348622 (25 bp)
GGAGACGGCATCGAGCAGCTTCAGT
LOC_Os06g11920
Os.5679.1.S1_at--822--1551Chr06:6348582..6348606 (25 bp)
AGCTTCAGTACCTGCGCGGAGAGTC
LOC_Os06g11920
Os.5679.1.S1_at--803--651Chr06:6348466..6348490 (25 bp)
ATGAAGGGTTACTACTCCCTCAACG
LOC_Os06g11920
Os.5679.1.S1_at--605--2131Chr06:6348426..6348450 (25 bp)
ACAGATCGCAGTGTCACCAGGGTGA
LOC_Os06g11920
Os.5679.1.S1_at--875--1711Chr06:6348411..6348435 (25 bp)
ACCAGGGTGACGTGTCGTGAACTGA
LOC_Os06g11920
Os.5679.1.S1_at--374--10211Chr06:6348381..6348405 (25 bp)
TATTTCATCCCCTTTTGCAAGTTTG
LOC_Os06g11920
Os.5679.1.S1_at--316--6911Chr06:6348293..6348317 (25 bp)
GTATCTGACAAGAATCCCATGACTG
LOC_Os06g11920
Os.5679.1.S1_at--481--8751Chr06:6348219..6348243 (25 bp)
TGTAGAACCTGTCTAGCTGTATGGT
LOC_Os06g11920
Os.5679.1.S1_at--546--4731Chr06:6348204..6348228 (25 bp)
GCTGTATGGTTATTTTTGTCCACTT
LOC_Os06g11920
Os.5679.1.S1_at--712--10191Chr06:6348190..6348214 (25 bp)
TTTGTCCACTTATATGAACCCCTTG
LOC_Os06g11920
Os.5679.1.S1_at--495--1651Chr06:6348173..6348197 (25 bp)
ACCCCTTGGGCAGAGAAAGTTGTCT
LOC_Os06g11920
Target Sequence 
GGAGACGGCATCGAGCAGCTTCAGTACCTGCGCGGAGAGTCGAGGTTCTCCGACCACCGGCCGGTCTGCGGCGTGTTCGC
CGTCGAGGTGGACGGCGGCGATGGCGACGGCGGCGGCGCCGCCGGCAAGATCATGAAGGGTTACTACTCCCTCAACGCCC
GGATCGGCGGTGACAGATCGCAGTGTCACCAGGGTGACGTGTCGTGAACTGATTATATATTTCATCCCCTTTTGCAAGTT
TGCAATGATAGGGTCTTGTGTATAAGAAGGTTTATTACCAAGAACAGAGGATATTGTAGATACTAGTATCTGACAAGAAT
CCCATGACTGAAATTAGTACGAGTACTGACTAATTAAGAATACAGTAATTTTCGTAATTTGTAGAACCTGTCTAGCTGTA
TGGTTATTTTTGTCCACTTATATGAACCCCTTGGGCAGAGAAAGTTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5679.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis