Browse Element(s) Details


Os.56955.1.S1_at

Description gb:AK110628.1
DB_XREF= gi:32995837
TID=Os.56955.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56955 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-B06, full insert sequence.
FL= gb:AK110628.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3413011/11Mitochondrial glycoprotein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34090OsAffx.20387.1.S1_x_at2/118+21235631..21241630retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g34100OsAffx.29502.2.S1_at11/118+21248357..21249162hypothetical protein
LOC_Os08g34100OsAffx.29502.2.S1_x_at11/118+21248357..21249162hypothetical protein
LOC_Os08g34110NANA8+21255076..21259042retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g34120Os.24101.1.A1_at8/118+21260558..21262140expressed protein
LOC_Os08g34130Os.56955.1.S1_at11/118+21264868..21266603Mitochondrial glycoprotein, expressed
LOC_Os08g34140Os.13950.1.S1_at11/118+21267237..21270593Vesicle transport v-SNARE protein, expressed
LOC_Os08g34150Os.18335.2.S1_x_at11/118+21274565..21275620Outer membrane lipoprotein blc precursor, putative, expressed
LOC_Os08g34160NANA8+21278310..21283308CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34170Os.8198.1.S1_at11/118+21285907..21288251CAF1 family ribonuclease containing protein, expressed
LOC_Os08g34170Os.8198.1.S2_at11/118+21285907..21288251CAF1 family ribonuclease containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56955.1.S1_at--825--8411Chr08:21265287..21265311 (25 bp)
GGCCCGCAGCTCAGGATGCACATCA
LOC_Os08g34130
Os.56955.1.S1_at--1114--8931Chr08:21266207..21266231 (25 bp)
TGACGAGATGCAAAGCACGGTACAT
LOC_Os08g34130
Os.56955.1.S1_at--969--3331Chr08:21266222..21266246 (25 bp)
CACGGTACATGATTACTTGGAGCAT
LOC_Os08g34130
Os.56955.1.S1_at--436--7771Chr08:21266252..21266276 (25 bp)
GGTGAACGATGAGCTTGCCGCATTC
LOC_Os08g34130
Os.56955.1.S1_at--941--4111Chr08:21266270..21266294 (25 bp)
CGCATTCCTGCACTCATACATGGAA
LOC_Os08g34130
Os.56955.1.S1_at--410--2871Chr08:21266494..21266518 (25 bp)
AAGGTTGTAGTTGTACACTCCCAGT
LOC_Os08g34130
Os.56955.1.S1_at--24--3331Chr08:21266509..21266533 (25 bp)
CACTCCCAGTTCAGGACGAATTGGT
LOC_Os08g34130
Os.56955.1.S1_at--77--8091Chr08:21266522..21266546 (25 bp)
GGACGAATTGGTTCACTAGTTTATC
LOC_Os08g34130
Os.56955.1.S1_at--1024--7871Chr08:21266551..21266575 (25 bp)
GGTTTATACTCTACTGTGCTTCTCA
LOC_Os08g34130
Os.56955.1.S1_at--1140--1951Chr08:21266563..21266587 (25 bp)
ACTGTGCTTCTCATCTTGAATATGG
LOC_Os08g34130
Os.56955.1.S1_at--183--9011Chr08:21266579..21266603 (25 bp)
TGAATATGGTATACTGTGACAGTTC
LOC_Os08g34130
Target Sequence 
GGCCCGCAGCTCAGGATGCACATCANCGTCAACGTCGAGGTCACCAAGGCCGCGCGGCGTGACCTGGCGCTCACCTTCNA
GTGCTCGGCGTGGCCCGATGANATGGAGGTGGAGAGGGTCTACCCCGTCCGCCGCGGCGGGCCGGCGGCGGCGCANCAGT
ACATGGGCCGCCANTTCAGTGAGTTGGATGACGAGATGCAAAGCACGGTACATGATTACTTGGAGCATCNAGGGGTGAAC
GATGAGCTTGCCGCATTCCTGCACTCATACATGGAAAACAAGGAGCAGACAGANCTGGTCCGGTGGTTTAAGAATGTGGA
GTGCTTCNTAAAAAAGTANGCGATATCTTNTANACACTTATGAGACANCATTAGTTGATCTTGCTTTGCAACNATTACAA
CCAGTGATCATTNTGGNACCAAATNTTCCCAATGCCACAAGTATTTGTTGNTATTATTGNTGNGCTAGATACACGAAGGT
TGTAGTTGTACACTCCCAGTTCAGGACGAATTGGTTCACTAGTTTATCAAATGGTTTATACTCTACTGTGCTTCTCATCT
TGAATATGGTATACTGTGACAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis