Browse Element(s) Details


Os.56962.1.S1_at

Description gb:AK110636.1
DB_XREF= gi:32995845
TID=Os.56962.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56962 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-169-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-169-C04, full insert sequence.
FL= gb:AK110636.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1901011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g18970OsAffx.26950.1.S1_at11/115+10982991..10985566hypothetical protein
LOC_Os05g18980OsAffx.8589.1.S1_at1/115+10993853..10997167transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18990Os.39476.1.S1_at4/115+10999195..11001463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g18990OsAffx.8455.1.S1_at1/115+10999195..11001463transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g19000Os.5881.1.S1_at2/115+11004994..11007169expressed protein
LOC_Os05g19010Os.56962.1.S1_at11/115+11008445..11009200expressed protein
LOC_Os05g19020NANA5+11012876..11014091retrotransposon protein, putative, unclassified
LOC_Os05g19030Os.5881.1.S1_at11/115+11021940..11024991expressed protein
LOC_Os05g19040Os.54915.1.S1_at9/115+11028518..11031728B-cell receptor-associated protein 31-like containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56962.1.S1_at--826--10232Chr05:11008629..11008653 (25 bp)
TTTGGCATGAACTGCCCGATCGACA
LOC_Os05g19010
Os.56962.1.S1_at--633--1511Chr05:11008653..11008677 (25 bp)
AGCAGCGCGAATCCGACGAAGTAGT
LOC_Os05g19010
Os.56962.1.S1_at--86--5331Chr05:11008670..11008694 (25 bp)
GAAGTAGTTGCACACCACGTACGTG
LOC_Os05g19010
Os.56962.1.S1_at--723--9151Chr05:11008729..11008753 (25 bp)
TGCCCACCTTGCTGCCGTAGATGGA
LOC_Os05g19010
Os.56962.1.S1_at--987--10031Chr05:11008746..11008770 (25 bp)
TAGATGGACGGGACCTGACCGGCTC
LOC_Os05g19010
Os.56962.1.S1_at--514--4231Chr05:11008844..11008868 (25 bp)
CCGATCTCCTTGATGGCGGTGATGA
LOC_Os05g19010
Os.56962.1.S1_at--614--9431Chr05:11008924..11008948 (25 bp)
TCGGTGTCGCGGACTGCACGCAGCA
LOC_Os05g19010
Os.56962.1.S1_at--529--1971Chr05:11008936..11008960 (25 bp)
ACTGCACGCAGCAGGCTAGCGTGGT
LOC_Os05g19010
Os.56962.1.S1_at--904--3711Chr05:11008951..11008975 (25 bp)
CTAGCGTGGTCGTAGAGGTCGCCAT
LOC_Os05g19010
Os.56962.1.S1_at--709--4411Chr05:11009133..11009157 (25 bp)
GCCACCGGATGCCATTGATAAATTT
LOC_Os05g19010
Os.56962.1.S1_at--791--2251Chr05:11009152..11009176 (25 bp)
AAATTTGCCTTTGCGTATTGTATGA
LOC_Os05g19010
Target Sequence 
TTTGGCATGAACTGCCCGATCGACAGCAGCGCGAATCCGACGAAGTAGTTGCACACCACGTACGTGTGCGAGATGCCCTT
CGCCTTCACGGTGCGCCAGATGCCCACCTTGCTGCCGTAGATGGACGGGACCTGACCGGCTCCACCGCGGCGCTGGCGCC
GCGCCCCGGGTCCAGGCCGAACTCGGAGGGGATGAACCTCCGGACGTGGCCGCCGCCGATCTCCTTGATGGCGGTGATGA
GACTGGTCTGGTCAGGGACCTGGGGCGACTGCACTGCGGTGCGGAGATGACGACGTCGGTGTCGCGGACTGCACGCAGCA
GGCTAGCGTGGTCGTAGAGGTCGCCATGGAGGAGGGTGACGCCGGCGTTGCGGAAGCTTTGGAGCAGCTGCGCCTTGACG
AGGGCGGTGGTGAGATGACCCAGCCGCGCGCGGGCGGCGACGACATGCCGGCCGATGTACCCCGTGCCCCCGACCACCAG
GATCCTGCTCTTCGTCGTCTGGTCGCCACCGGATGCCATTGATAAATTTGCCTTTGCGTATTGTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis