Browse Element(s) Details


Os.5698.1.S1_s_at

Description gb:AK063349.1
DB_XREF= gi:32973367
TID=Os.5698.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5698 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-B11, full insert sequence.
FL= gb:AK063349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g337001/114F5 protein family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33660NANA5+19727993..19728301hypothetical protein
LOC_Os05g33670OsAffx.27143.1.S1_at3/115+19729760..19730047hypothetical protein
LOC_Os05g33680OsAffx.27144.2.S1_s_at11/115+19731594..19734629hypothetical protein
LOC_Os05g33680Os.57402.1.S1_at11/115+19731594..19734629hypothetical protein
LOC_Os05g33690Os.48467.1.S1_at11/115+19745329..19747687Leucine Rich Repeat family protein, expressed
LOC_Os05g33700OsAffx.27145.1.S1_at10/115+19750857..197551994F5 protein family protein
LOC_Os05g33700OsAffx.3509.1.S1_at5/115+19750857..197551994F5 protein family protein
LOC_Os05g33700Os.27131.1.S1_at1/115+19750857..197551994F5 protein family protein
LOC_Os05g33700Os.5698.1.S1_s_at1/115+19750857..197551994F5 protein family protein
LOC_Os05g33710Os.57321.1.S1_at11/115+19755355..19763441LEC14B protein, putative, expressed
LOC_Os05g33710Os.15190.1.A1_at11/115+19755355..19763441LEC14B protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5698.1.S1_s_at--927--3691Chr05:19754769..19755006 (25 bp)
CTATGACTCGCGGCGACCAGAGGGA
LOC_Os05g33700
Os.5698.1.S1_s_at--493--7911Chr05:19755244..19755268 (25 bp)
GGTTGCGTGTGACAACACCGTTCTT
NONE
Os.5698.1.S1_s_at--1139--4651Chr05:19755248..19755272 (25 bp)
GCGTGTGACAACACCGTTCTTTCGA
NONE
Os.5698.1.S1_s_at--232--7371Chr05:19755252..19755276 (25 bp)
GTGACAACACCGTTCTTTCGATCGT
NONE
Os.5698.1.S1_s_at--907--2471Chr05:19755257..19755281 (25 bp)
AACACCGTTCTTTCGATCGTCATCT
NONE
Os.5698.1.S1_s_at--952--1771Chr05:19755260..19755284 (25 bp)
ACCGTTCTTTCGATCGTCATCTGCT
NONE
Os.5698.1.S1_s_at--705--10291Chr05:19755267..19755291 (25 bp)
TTTCGATCGTCATCTGCTCCTGATC
NONE
Os.5698.1.S1_s_at--419--471Chr05:19755278..19755302 (25 bp)
ATCTGCTCCTGATCCTGCCCATGTT
NONE
Os.5698.1.S1_s_at--753--3431Chr05:19755305..19755329 (25 bp)
CAGATCTGTACTGCTATTTCTTGGA
NONE
Os.5698.1.S1_s_at--469--8751Chr05:19755311..19755335 (25 bp)
TGTACTGCTATTTCTTGGATCTTTG
NONE
Os.5698.1.S1_s_at--782--3611Chr05:19755324..19755348 (25 bp)
CTTGGATCTTTGGAAATTGCATTAC
NONE
Target Sequence 
CTATGACTCGCGGCGACCAGAGGGAGCGGGACAGGCAGAGGGCGCAGGCGCGGAAGCCGGTTGTGAAGGGGCGCGACGAC
GGGCTCACGCCGGAGCAGCGCCGCGAGAGGGACGCCAAGGCGCTGCAGGAGAAGGCGGCCAGGAAGGCGGCGCAGGCCAC
CGGGCAGGGCGGCATATGCCGGCATTTGATCTGTTCTCACCTCACGTCTGGTTGCGTGTGACAACACCGTTCTTTCGATC
GTCATCTGCTCCTGATCCTGCCCATGTTGGCAGATCTGTACTGCTATTTCTTGGATCTTTGGAAATTGCATTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5698.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis