Browse Element(s) Details


Os.57402.1.S1_at

Description gb:AK111462.1
DB_XREF= gi:32996671
TID=Os.57402.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57402 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-D02, full insert sequence.
FL= gb:AK111462.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3368011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33644OsAffx.27142.1.S1_at10/115+19711657..19722494inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed
LOC_Os05g33660NANA5+19727993..19728301hypothetical protein
LOC_Os05g33670OsAffx.27143.1.S1_at3/115+19729760..19730047hypothetical protein
LOC_Os05g33680OsAffx.27144.2.S1_s_at11/115+19731594..19734629hypothetical protein
LOC_Os05g33680Os.57402.1.S1_at11/115+19731594..19734629hypothetical protein
LOC_Os05g33690Os.48467.1.S1_at11/115+19745329..19747687Leucine Rich Repeat family protein, expressed
LOC_Os05g33700OsAffx.27145.1.S1_at10/115+19750857..197551994F5 protein family protein
LOC_Os05g33700OsAffx.3509.1.S1_at5/115+19750857..197551994F5 protein family protein
LOC_Os05g33700Os.27131.1.S1_at1/115+19750857..197551994F5 protein family protein
LOC_Os05g33700Os.5698.1.S1_s_at1/115+19750857..197551994F5 protein family protein
LOC_Os05g33710Os.57321.1.S1_at11/115+19755355..19763441LEC14B protein, putative, expressed
LOC_Os05g33710Os.15190.1.A1_at11/115+19755355..19763441LEC14B protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57402.1.S1_at--243--2491Chr05:19732252..19732276 (25 bp)
AACAGAGTCTATTTTCTACTTGAAC
LOC_Os05g33680
Os.57402.1.S1_at--1114--2234Chr06:30722084..30722108 (25 bp)
AAATTGTTTCAATTACTGCTCAAGT
NONE
Os.57402.1.S1_at--158--1991Chr05:19732315..19732339 (25 bp)
ACTGCTCAAGTTTGATTTCGAACTA
LOC_Os05g33680
Os.57402.1.S1_at--312--6271Chr05:19732345..19732369 (25 bp)
GATGTGCTTACATATCTATCGTTGA
LOC_Os05g33680
Os.57402.1.S1_at--956--4032Chr07:11225635..11225654 (20 bp)
CGTTGAAGCAGATGATGGCCCCGGC
NONE
Os.57402.1.S1_at--242--10231Chr05:19732581..19732605 (25 bp)
TTTGCACCGCCGGAGCGTCGATGAC
LOC_Os05g33680
Os.57402.1.S1_at--224--8091Chr05:19732592..19732616 (25 bp)
GGAGCGTCGATGACAAGTCCGCCGC
LOC_Os05g33680
Os.57402.1.S1_at--1078--10451Chr05:19732631..19732655 (25 bp)
TTACCCATGGCGTTGCGTCGGACGT
LOC_Os05g33680
Os.57402.1.S1_at--336--2611Chr05:19732747..19732771 (25 bp)
AACCGGGTGTAATACTGCTCTAGGA
LOC_Os05g33680
Os.57402.1.S1_at--934--4791Chr05:19732763..19732787 (25 bp)
GCTCTAGGAGCTATTGTAACCGGTT
LOC_Os05g33680
Os.57402.1.S1_at--470--9793Chr05:19732797..19732821 (25 bp)
TAAGAGACACTGGATATCTGGTTTT
LOC_Os05g33680
Target Sequence 
AACAGAGTCTATTTTCTACTTGAACTCTTTTTTCTTTCTTTTTTGGCTGAAATTGTTTCAATTACTGCTCAAGTTTGATT
TCGAACTATCAATGATGTGCTTACATATCTATCGTTGAAGCAGATGATGGCCCCGGCAATGATGTCTTCAGTGTTTCTTT
TCTGACCATGGAAGGGTGTTGCTGCCTCGTCTGCGACGGCGATGGCGACATGCATCTAGATGGGGCTGTGAGCAGCACGA
TGGGCAGAGCCCGGTCGGGAGGAGGAGGACGGCGCCGGAGACGGCGAGCGTGAGGAAGCCGACGACTTGGGTGGAGTTGG
GCGCGTGCGTTTGCACCGCCGGAGCGTCGATGACAAGTCCGCCGCCGCGGGCGCTTACCTTACCCATGGCGTTGCGTCGG
ACGTGCGCGTGCTGCTGCCGATGGGAAGAAAAAAAAGAGTCTGACATATGGGACCCACGTGGGTCCCACGCTGAGTCAAC
TGCCACGTAGGACAAAACCGGGTGTAATACTGCTCTAGGAGCTATTGTAACCGGTTTTAATTAGTTAAGAGACACTGGAT
ATCTGGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis