Browse Element(s) Details


OsAffx.27145.1.S1_at

Description tigr:9633.m03112
TID=OsAffx.27145.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3370010/114F5 protein family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33660NANA5+19727993..19728301hypothetical protein
LOC_Os05g33670OsAffx.27143.1.S1_at3/115+19729760..19730047hypothetical protein
LOC_Os05g33680OsAffx.27144.2.S1_s_at11/115+19731594..19734629hypothetical protein
LOC_Os05g33680Os.57402.1.S1_at11/115+19731594..19734629hypothetical protein
LOC_Os05g33690Os.48467.1.S1_at11/115+19745329..19747687Leucine Rich Repeat family protein, expressed
LOC_Os05g33700OsAffx.27145.1.S1_at10/115+19750857..197551994F5 protein family protein
LOC_Os05g33700OsAffx.3509.1.S1_at5/115+19750857..197551994F5 protein family protein
LOC_Os05g33700Os.27131.1.S1_at1/115+19750857..197551994F5 protein family protein
LOC_Os05g33700Os.5698.1.S1_s_at1/115+19750857..197551994F5 protein family protein
LOC_Os05g33710Os.57321.1.S1_at11/115+19755355..19763441LEC14B protein, putative, expressed
LOC_Os05g33710Os.15190.1.A1_at11/115+19755355..19763441LEC14B protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27145.1.S1_at--902--9191Chr05:19752484..19752508 (25 bp)
TGCCATCGTTGGGTGTCATGAACAA
LOC_Os05g33700
OsAffx.27145.1.S1_at--202--6631Chr05:19752491..19752515 (25 bp)
GTTGGGTGTCATGAACAACATGTCA
LOC_Os05g33700
OsAffx.27145.1.S1_at--204--1731Chr05:19752515..19752539 (25 bp)
ACCATCGATGATGGCTGGACCTAGT
LOC_Os05g33700
OsAffx.27145.1.S1_at--1099--851Chr05:19752525..19752549 (25 bp)
ATGGCTGGACCTAGTGTTTGCTCTG
LOC_Os05g33700
OsAffx.27145.1.S1_at--56--5851Chr05:19752532..19752556 (25 bp)
GACCTAGTGTTTGCTCTGTTGTGTC
LOC_Os05g33700
OsAffx.27145.1.S1_at--288--6631Chr05:19752549..19752599 (25 bp)
GTTGTGTCGTTTTTGTCCCTCGCCT
LOC_Os05g33700
OsAffx.27145.1.S1_at--112--9331Chr05:19752629..19752653 (25 bp)
TCCCATGTGAGCGAGTGTCTGAGCG
LOC_Os05g33700
OsAffx.27145.1.S1_at--964--1691Chr05:19752683..19752707 (25 bp)
AGCCAGCAGGCGCACAACTTGAGGT
LOC_Os05g33700
OsAffx.27145.1.S1_at--1099--4791Chr05:19752733..19752757 (25 bp)
GCTCGACGCCATCACTGTTAGAGTA
LOC_Os05g33700
OsAffx.27145.1.S1_at--947--5791Chr05:19752737..19752761 (25 bp)
GACGCCATCACTGTTAGAGTACGCA
LOC_Os05g33700
OsAffx.27145.1.S1_at--914--10051NONE
TAGTCTGATGGGAGGGTGCGCACGC
NONE
Target Sequence 
TGCCATCGTTGGGTGTCATGAACAACATGTCACCATCGATGATGGCTGGACCTAGTGTTTGCTCTGTTGTGTCGTTTTTG
TCCCTCGCCTTCCTCTCTATGGCACTGAGTTTGTTGAGCTCCCATGTGAGCGAGTGTCTGAGCGAGCATCGGTGGCAGGC
TGGCAGCAGCCACAGCCAGCAGGCGCACAACTTGAGGTCGACCTCGCCGTCGGGGGTCATGCTGCTCGACGCCATCACTG
TTAGAGTACGCAGCTCGGCCCATCAACCATGGGCTACCCAGGTCATATTGGGTCTGCTCCACCACAGGTTCAACTGGAGC
CACAACTTTAGGTCCTGGGCCTACACCCAAAAGACTAGTCTGATGGGAGGGTGCGCACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27145.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis