Browse Element(s) Details


OsAffx.27142.1.S1_at

Description tigr:9633.m03104
TID=OsAffx.27142.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY133631 AT5g18860F17K4_110
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3364410/11inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33610Os.17240.1.S1_at11/115+19685640..19691882expressed protein
LOC_Os05g33620OsAffx.14942.2.S1_at10/115+19693331..19697459expressed protein
LOC_Os05g33620Os.20473.1.S1_s_at10/115+19693331..19697459expressed protein
LOC_Os05g33630Os.11923.1.S1_x_at11/115+19696993..19702819inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed
LOC_Os05g33644OsAffx.27142.1.S1_at10/115+19711657..19722494inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed
LOC_Os05g33660NANA5+19727993..19728301hypothetical protein
LOC_Os05g33670OsAffx.27143.1.S1_at3/115+19729760..19730047hypothetical protein
LOC_Os05g33680OsAffx.27144.2.S1_s_at11/115+19731594..19734629hypothetical protein
LOC_Os05g33680Os.57402.1.S1_at11/115+19731594..19734629hypothetical protein
LOC_Os05g33690Os.48467.1.S1_at11/115+19745329..19747687Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27142.1.S1_at--288--10431NONE
TTAAGAGCTTCCTCGAGACCCTAAA
NONE
OsAffx.27142.1.S1_at--642--7151Chr05:19713869..19713893 (25 bp)
GTCTCTTCAACATAACGGCCCAGTT
LOC_Os05g33644
OsAffx.27142.1.S1_at--906--3911Chr05:19713854..19713878 (25 bp)
CGGCCCAGTTTCCATTTTACAGAGA
LOC_Os05g33644
OsAffx.27142.1.S1_at--1075--6151Chr05:19713831..19713855 (25 bp)
GAGGTTCTATACAGTCCAGACTTCA
LOC_Os05g33644
OsAffx.27142.1.S1_at--716--6511Chr05:19713495..19713519 (25 bp)
GATATTCCTGTTGGCCGTGGTAGCA
LOC_Os05g33644
OsAffx.27142.1.S1_at--1068--6951Chr05:19713476..19713500 (25 bp)
GTAGCACTTCTGCATTAGGCACTGA
LOC_Os05g33644
OsAffx.27142.1.S1_at--403--2831Chr05:19713438..19713462 (25 bp)
AAGTATGTCAGTGCTATTCCCCAAG
LOC_Os05g33644
OsAffx.27142.1.S1_at--40--1111Chr05:19713411..19713435 (25 bp)
AGTGGTGGGCTTCTTGATTCTGACA
LOC_Os05g33644
OsAffx.27142.1.S1_at--784--6571Chr05:19713396..19713420 (25 bp)
GATTCTGACACTCTCTATGGACTAG
LOC_Os05g33644
OsAffx.27142.1.S1_at--410--8131Chr05:19713378..19713402 (25 bp)
GGACTAGCTCGGTCATTGCCAAGAA
LOC_Os05g33644
OsAffx.27142.1.S1_at--784--5311Chr05:19713347..19713371 (25 bp)
GAAGGTATCCTTCCAGTGACCAAAT
LOC_Os05g33644
Target Sequence 
TTAAGAGCTTCCTCGAGACCCTAAATCTCCCTGAGAACACTGGTCTCTTCAACATAACGGCCCAGTTTCCATTTTACAGA
GAGGTTCTATACAGTCCAGACTTCACAAACAAAAGTAGGGGGAAACCAGTCATTTTTGACATGGACATGAGTCCTGGAGA
TTTTATTTCACTTATATACCTTTTGAAGGTGCCTACAGAATTAATAGATTTAAAGGGGATTTTGGTCAGTGGCAATGGTT
GGGCCAATGTTGCAAGTATTGATATTGTTTATGACATTCTACATATGATGGGCCGTGATGATATTCCTGTTGGCCGTGGT
AGCACTTCTGCATTAGGCACTGAAAGTCTTGGTTGCAAGTATGTCAGTGCTATTCCCCAAGGTAGTGGTGGGCTTCTTGA
TTCTGACACTCTCTATGGACTAGCTCGGTCATTGCCAAGAAGTCCTAGAAGGTATCCTTCCAGTGACCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis