Browse Element(s) Details


Os.20473.1.S1_s_at

Description gb:AK062289.1
DB_XREF= gi:32972307
TID=Os.20473.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.20473 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-100-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-100-E05, full insert sequence.
FL= gb:AK062289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3362010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33600Os.57218.1.S1_at11/115+19673107..19675687Cytochrome P450 family protein, expressed
LOC_Os05g33600Os.15851.1.S1_at11/115+19673107..19675687Cytochrome P450 family protein, expressed
LOC_Os05g33610Os.17240.1.S1_at11/115+19685640..19691882expressed protein
LOC_Os05g33620OsAffx.14942.2.S1_at10/115+19693331..19697459expressed protein
LOC_Os05g33620Os.20473.1.S1_s_at10/115+19693331..19697459expressed protein
LOC_Os05g33630Os.11923.1.S1_x_at11/115+19696993..19702819inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed
LOC_Os05g33644OsAffx.27142.1.S1_at10/115+19711657..19722494inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20473.1.S1_s_at--441--4271Chr05:19695063..19695087 (25 bp)
CCTCCAAGGAGTTTCGCGTCAATAT
LOC_Os05g33620
Os.20473.1.S1_s_at--508--3111Chr05:19695083..19695107 (25 bp)
AATATCACCTCCAAGGCGGCATTCA
LOC_Os05g33620
Os.20473.1.S1_s_at--149--2931Chr05:19695095..19695119 (25 bp)
AAGGCGGCATTCAATTTCAATTACA
LOC_Os05g33620
Os.20473.1.S1_s_at--823--8771Chr05:19695130..19695154 (25 bp)
TGTTTGATGACAGGTCCTCGGCCTA
LOC_Os05g33620
Os.20473.1.S1_s_at--390--3771Chr05:19695146..19695170 (25 bp)
CTCGGCCTATTCTGGTCATAGTTCA
LOC_Os05g33620
Os.20473.1.S1_s_at--533--10051Chr05:19695164..19695188 (25 bp)
TAGTTCAGTGACATCTCCATTTGAT
LOC_Os05g33620
Os.20473.1.S1_s_at--267--9551NONE
TCTTCCGTCAAGTCAGAAACCGTTT
NONE
Os.20473.1.S1_s_at--911--1771Chr05:19696371..19696395 (25 bp)
ACCGTTTGTCTTATGAGCAGTTCAG
LOC_Os05g33620
Os.20473.1.S1_s_at--285--5031Chr05:19696387..19696411 (25 bp)
GCAGTTCAGTGCATTTCTAGCCAAT
LOC_Os05g33620
Os.20473.1.S1_s_at--37--10191Chr05:19696618..19696642 (25 bp)
TATACACCATCTTTGAGGGCCTAAT
LOC_Os05g33620
Os.20473.1.S1_s_at--476--1091Chr05:19696633..19696657 (25 bp)
AGGGCCTAATTACTCGCAATATTCA
LOC_Os05g33620
Target Sequence 
CCTCCAAGGAGTTTCGCGTCAATATCACCTCCAAGGCGGCATTCAATTTCAATTACATCAAGGAATTTGTTTGATGACAG
GTCCTCGGCCTATTCTGGTCATAGTTCAGTGACATCTCCATTTGATGCAGGAAGTCACACAGGACGAACACGAGTTGATG
GAAAAGAGTTCTTCCGTCAAGTCAGAAACCGTTTGTCTTATGAGCAGTTCAGTGCATTTCTAGCCAATGTAAAGGAGTTG
AACTCACACNAAACAGACCAGAGAGGATACACTAAGGAAGGCTGACGAAATATTTGGTCCAGATAACAAGGACCTATACA
CCATCTTTGAGGGCCTAATTACTCGCAATATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20473.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis