Browse Element(s) Details


Os.17240.1.S1_at

Description gb:AK099795.1
DB_XREF= gi:32985004
TID=Os.17240.1
CNT=20
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.17240 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013097F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097F10, full insert sequence.
FL= gb:AK061891.1 gb:AK072244.1 gb:AK099795.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3361011/11expressed protein
LOC_Os11g078701/11Type III restriction enzyme, res subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33590OsAffx.27141.1.S1_at11/115+19659153..19661654Cytochrome P450 family protein, expressed
LOC_Os05g33600Os.57218.1.S1_at11/115+19673107..19675687Cytochrome P450 family protein, expressed
LOC_Os05g33600Os.15851.1.S1_at11/115+19673107..19675687Cytochrome P450 family protein, expressed
LOC_Os05g33610Os.17240.1.S1_at11/115+19685640..19691882expressed protein
LOC_Os05g33620OsAffx.14942.2.S1_at10/115+19693331..19697459expressed protein
LOC_Os05g33620Os.20473.1.S1_s_at10/115+19693331..19697459expressed protein
LOC_Os05g33630Os.11923.1.S1_x_at11/115+19696993..19702819inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed
LOC_Os05g33644OsAffx.27142.1.S1_at10/115+19711657..19722494inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042594biological_processresponse to starvation
GO:0004525molecular_functionribonuclease III activity
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17240.1.S1_at--928--3871Chr05:19691206..19691230 (25 bp)
CTGTTTTTGCCTTCAGCGAAGAAGG
LOC_Os05g33610
Os.17240.1.S1_at--1063--7891Chr05:19691311..19691335 (25 bp)
GGTTGAACCTAATAATATACTCTGC
LOC_Os05g33610
Os.17240.1.S1_at--225--3091Chr05:19691321..19691345 (25 bp)
AATAATATACTCTGCTTTTACATAG
LOC_Os05g33610
Os.17240.1.S1_at--385--5931Chr05:19691345..19691369 (25 bp)
GAGAATGGAAAACAGTGCCCGTGAT
LOC_Os05g33610
Os.17240.1.S1_at--564--2131Chr05:19691356..19691380 (25 bp)
ACAGTGCCCGTGATATTACCTAGAA
LOC_Os05g33610
Os.17240.1.S1_at--502--7731Chr05:19691384..19691408 (25 bp)
GGTGGATTTCCATTAGGCTTTCGTG
LOC_Os05g33610
Os.17240.1.S1_at--614--4871Chr05:19691400..19691424 (25 bp)
GCTTTCGTGGAATAAATTGGTGCTG
LOC_Os05g33610
Os.17240.1.S1_at--84--7791Chr05:19691418..19691442 (25 bp)
GGTGCTGAGATGATAATCTACTATT
LOC_Os05g33610
Os.17240.1.S1_at--779--5391Chr05:19691462..19691486 (25 bp)
GAAGCTTGTGCTCGATATCCATTTG
LOC_Os05g33610
Os.17240.1.S1_at--66--10811Chr05:19691745..19691769 (25 bp)
TTGTTTATTTGTACAGTCTTTTCTG
LOC_Os05g33610
Os.17240.1.S1_at--780--3453Chr11:4023554..4023579 (23 bp)
CAGTCTTTTCTGTTTCATTAAGGAA
LOC_Os11g07870
Target Sequence 
CTGTTTTTGCCTTCAGCGAAGAAGGTTGAACCTAATAATATACTCTGCTTTTACATAGAGAATGGAAAACAGTGCCCGTG
ATATTACCTAGAAAATGGTGGATTTCCATTAGGCTTTCGTGGAATAAATTGGTGCTGAGATGATAATCTACTATTTGGTA
CATATTAGAAAGGTGAAGCTTGTGCTCGATATCCATTTGTGAGAAGTTTTACTCAGGAATTGAGATCAAGATCCTTCCTT
CCGGGCCATTAACTAATCCACGGATCCACGTTAAGGGGAGCTTGGTGTTGTCGAGAAGTTGCTGCTGCCTGCCGCAACAC
TGCCCCTTTTCCGTTGCTTTGTACATACTGTAAAAGACCATTTGTTTTGTGAAATACNTCTCTGGAACATTGGACGGTCC
AACNNCCTTGGCAGCCATATTTGTTGACTGCTTCCTGCCAAGGCCTGTTAATGTTCCTTGTTTATTTGTACAGTCTTTTC
TGTTTCATTAAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis