Browse Element(s) Details


Os.11923.1.S1_x_at

Description gb:AK070068.1
DB_XREF= gi:32980092
TID=Os.11923.1
CNT=59
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.11923 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041D03, full insert sequence.
FL= gb:AK066859.1 gb:AK069515.1 gb:AK070068.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3363011/11inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33600Os.57218.1.S1_at11/115+19673107..19675687Cytochrome P450 family protein, expressed
LOC_Os05g33600Os.15851.1.S1_at11/115+19673107..19675687Cytochrome P450 family protein, expressed
LOC_Os05g33610Os.17240.1.S1_at11/115+19685640..19691882expressed protein
LOC_Os05g33620OsAffx.14942.2.S1_at10/115+19693331..19697459expressed protein
LOC_Os05g33620Os.20473.1.S1_s_at10/115+19693331..19697459expressed protein
LOC_Os05g33630Os.11923.1.S1_x_at11/115+19696993..19702819inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed
LOC_Os05g33644OsAffx.27142.1.S1_at10/115+19711657..19722494inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11923.1.S1_x_at--86--8971Chr05:19697660..19697684 (25 bp)
TGAAACCTTCAGTGGAACTCAAGCC
LOC_Os05g33630
Os.11923.1.S1_x_at--244--3251Chr05:19697641..19697665 (25 bp)
CAAGCCAGTAAGTGTTATTGCCAAC
LOC_Os05g33630
Os.11923.1.S1_x_at--646--1931Chr05:19697604..19697628 (25 bp)
ACGGACGGGCAGATTGTCATCAGCA
LOC_Os05g33630
Os.11923.1.S1_x_at--876--5651Chr05:19697492..19697516 (25 bp)
GACAGTCTGCCGTTATTGGGAGTTT
LOC_Os05g33630
Os.11923.1.S1_x_at--206--931Chr05:19697456..19697480 (25 bp)
AGGCAATTTGGAGCAGGCCGGTAAA
LOC_Os05g33630
Os.11923.1.S1_x_at--1142--2511Chr05:19697401..19697425 (25 bp)
AACTTTTGTAGTAGCATTAGCGTGC
LOC_Os05g33630
Os.11923.1.S1_x_at--998--7091Chr05:19697295..19697319 (25 bp)
GTCACTGGGTGCTGAAGAATCGCTC
LOC_Os05g33630
Os.11923.1.S1_x_at--1028--5371Chr05:19697282..19697306 (25 bp)
GAAGAATCGCTCCATGAGTCGCGAA
LOC_Os05g33630
Os.11923.1.S1_x_at--439--6091Chr05:19697267..19697291 (25 bp)
GAGTCGCGAAGTAACCTGGAGAATT
LOC_Os05g33630
Os.11923.1.S1_x_at--170--1251Chr05:19697173..19697197 (25 bp)
AGTTGAGCATTGATGTGACCAGCAA
LOC_Os05g33630
Os.11923.1.S1_x_at--423--8631Chr05:19697145..19697169 (25 bp)
TGGGATACGTTTTTCAGTTTGTGCT
LOC_Os05g33630
Target Sequence 
TGAAACCTTCAGTGGAACTCAAGCCAGTAAGTGTTATTGCCAACACAAACAAAAGCACGGACGGGCAGATTGTCATCAGC
AAGAATAGTGCAAAGCTGGTAAGGGTATTGAGCGATTTCGATGGTGAAATATATAGCAAACAATTGGCAAATTCTTTAGC
AAACAAGAGACAGTCTGCCGTTATTGGGAGTTTTGAAGAACAAAAGGCAATTTGGAGCAGGCCGGTAAATAGTTCAGGGA
ATATAAAAAAACAAAAGTGAACTTTTGTAGTAGCATTAGCGTGCTAAAAAAATATATTAAAGATTACATAGCNCAGGTAA
TAAGAAAGCTGACATGATAATGCTTGAAGTGGCTGAAGAACGGGTGTCACTGGGTGCTGAAGAATCGCTCCATGAGTCGC
GAAGTAACCTGGAGAATTAATCATTTATCTTTTTTCTTTTGATTACACAAAAAGGAAAATTATGTTTCTTTNTGAATTTT
GTNCCGTAGTTGAGCATTGATGTGACCAGCAAATNTGGGATACGTTTTTCAGTTTGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11923.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis