Browse Element(s) Details


OsAffx.14942.2.S1_at

Description tigr:9633.m03099
TID=OsAffx.14942.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3362010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33600Os.57218.1.S1_at11/115+19673107..19675687Cytochrome P450 family protein, expressed
LOC_Os05g33600Os.15851.1.S1_at11/115+19673107..19675687Cytochrome P450 family protein, expressed
LOC_Os05g33610Os.17240.1.S1_at11/115+19685640..19691882expressed protein
LOC_Os05g33620OsAffx.14942.2.S1_at10/115+19693331..19697459expressed protein
LOC_Os05g33620Os.20473.1.S1_s_at10/115+19693331..19697459expressed protein
LOC_Os05g33630Os.11923.1.S1_x_at11/115+19696993..19702819inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed
LOC_Os05g33644OsAffx.27142.1.S1_at10/115+19711657..19722494inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14942.2.S1_at--89--1371Chr05:19696953..19696977 (25 bp)
AGAGCAAACTTTCCTCGCATGTATC
LOC_Os05g33620
OsAffx.14942.2.S1_at--423--2531Chr05:19696959..19696983 (25 bp)
AACTTTCCTCGCATGTATCAGTCAA
LOC_Os05g33620
OsAffx.14942.2.S1_at--560--6891Chr05:19696973..19696997 (25 bp)
GTATCAGTCAATCAAACCACTTTGA
LOC_Os05g33620
OsAffx.14942.2.S1_at--433--1731Chr05:19697017..19697041 (25 bp)
ACCAGTGCCCTTTCATACAAGTGTA
LOC_Os05g33620
OsAffx.14942.2.S1_at--1030--2371Chr05:19697067..19697091 (25 bp)
AAACGGCTTGATTTGCCGCAGAGGT
LOC_Os05g33620
OsAffx.14942.2.S1_at--120--6911Chr05:19697162..19697186 (25 bp)
GTATCCCAGATTTGCTGGTCACATC
LOC_Os05g33620
OsAffx.14942.2.S1_at--675--2991NONE
AATGCTCAACTACGCACCCAGTGAC
NONE
OsAffx.14942.2.S1_at--863--6731Chr05:19697324..19697348 (25 bp)
GTTCTTCAGCCACTTCAAGCATTAT
LOC_Os05g33620
OsAffx.14942.2.S1_at--553--4951Chr05:19697342..19697366 (25 bp)
GCATTATCATGTCAGCTTTCTTATT
LOC_Os05g33620
OsAffx.14942.2.S1_at--404--4891Chr05:19697356..19697380 (25 bp)
GCTTTCTTATTACCTGTGCTATGTA
LOC_Os05g33620
OsAffx.14942.2.S1_at--588--5091Chr05:19697401..19697425 (25 bp)
GCACGCTAATGCTACTACAAAAGTT
LOC_Os05g33620
Target Sequence 
AGAGCAAACTTTCCTCGCATGTATCAGTCAATCAAACCACTTTGAAGAAGATAAATTAAATAGCACCAGTGCCCTTTCAT
ACAAGTGTAGCTCTATTGAATATTCTTTTGGTAAAAACGGCTTGATTTGCCGCAGAGGTAAATAATTTCAGACTGTAATT
ATTTATACTGCTTGAATGATTCAGTGGTTCAGAGCACAAACTGAAAAACGTATCCCAGATTTGCTGGTCACATCAATGCT
CAACTACGCACCCAGTGACACCCGTTCTTCAGCCACTTCAAGCATTATCATGTCAGCTTTCTTATTACCTGTGCTATGTA
ATCTTTAATATATTTTTTTAGCACGCTAATGCTACTACAAAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14942.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis