Browse Element(s) Details


Os.56985.1.S1_a_at

Description gb:D88619.1
DB_XREF= gi:2605620
GEN=Osmyb3
TID=Os.56985.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56985 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for OSMYB3, complete cds.
PROD=OSMYB3
FL= gb:D88619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2961411/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29570OsAffx.25281.1.S1_at9/113+16811515..16817757Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os03g29570Os.52574.2.S1_x_at1/113+16811515..16817757Mps one binder kinase activator-like 1A, putative, expressed
LOC_Os03g29584OsAffx.25282.1.S1_at11/113+16818929..16824042hypothetical protein
LOC_Os03g29584OsAffx.3364.1.S1_at10/113+16818929..16824042hypothetical protein
LOC_Os03g29600OsAffx.10065.1.S1_at4/113+16828734..16831972transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29600Os.53970.1.S1_at1/113+16828734..16831972transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29614Os.56985.1.S1_a_at11/113+16834438..16838634Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g29614OsAffx.22005.1.S1_x_at1/113+16834438..16838634Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g29630OsAffx.25283.1.S1_at11/113+16843870..16847613Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os03g29650NANA3+16858656..16865217retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009611biological_processresponse to wounding
GO:0009800biological_processcinnamic acid biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009845biological_processseed germination
GO:0009892biological_processnegative regulation of metabolism
GO:0010023biological_processproanthocyanidin biosynthesis
GO:0010026biological_processtrichome differentiation (sensu Magnoliophyta)
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56985.1.S1_a_at--75--8631Chr03:16834998..16835022 (25 bp)
TGGGAGGACTCGACGGCTTCCTGAT
LOC_Os03g29614
Os.56985.1.S1_a_at--289--5891Chr03:16834926..16834950 (25 bp)
GAGCGGTGCCGAATCTGCCGATGCC
LOC_Os03g29614
Os.56985.1.S1_a_at--794--1851Chr03:16834722..16834746 (25 bp)
ACGACTACTTGGAGTTCGCGCCATG
LOC_Os03g29614
Os.56985.1.S1_a_at--265--871Chr03:16834700..16834724 (25 bp)
ATGGCTCCTCTGATAGCGGCATCCA
LOC_Os03g29614
Os.56985.1.S1_a_at--500--9991Chr03:16834687..16834711 (25 bp)
TAGCGGCATCCATCCATGGATCATT
LOC_Os03g29614
Os.56985.1.S1_a_at--256--2811Chr03:16834622..16834646 (25 bp)
AAGATCGATGATTGCTTTGCTGGTC
LOC_Os03g29614
Os.56985.1.S1_a_at--590--7471Chr03:16834597..16834621 (25 bp)
GTGTGTTCCTGCGAGTCGGATCATC
LOC_Os03g29614
Os.56985.1.S1_a_at--1161--9591Chr03:16834577..16834601 (25 bp)
TCATCGGCACGAAGAGAGATCTCAT
LOC_Os03g29614
Os.56985.1.S1_a_at--406--6031Chr03:16834562..16834586 (25 bp)
GAGATCTCATCGATTAAGTAGGCGC
LOC_Os03g29614
Os.56985.1.S1_a_at--218--911Chr03:16834534..16834558 (25 bp)
AGGCGTACGTTGAAGCTTAGCTGCT
LOC_Os03g29614
Os.56985.1.S1_a_at--432--5751Chr03:16834498..16834522 (25 bp)
GACGTAGTCAGATGACCATTTCCTT
LOC_Os03g29614
Target Sequence 
TGGGAGGACTCGACGGCTTCCTGATCAGCCCGTGGCGTGGCGGCGGCCACGACGACGGTAACGCCGCCGCCGGAGCGGTG
CCGAATCTGCCGATGCCGATTGGCTATAAGCTCGGCGGCGCCGGTGGCGGTGGCGAGGCTGGAGCTGTTGACCTGGAGGC
GTTGCTGGGGCAGCTGGAAGCAGAGGAAGACGACGACGGTGACCACCACCACCACCACCACCACCACCACCACCAGTAGG
AGGAGGAGGTGCCTTCTTCGCTTGGGGACGAAGACGACGACTACTTGGAGTTCGCGCCATGGCTCCTCTGATAGCGGCAT
CCATCCATGGATCATTGTGGAATCGAATCAGTCGAGCTGAGAGTTGAGAGTTGAGAAAGATCGATGATTGCTTTGCTGGT
CGTGTGTTCCTGCGAGTCGGATCATCGGCACGAAGAGAGATCTCATCGATTAAGTAGGCGCAGAAGGCGTACGTTGAAGC
TTAGCTGCTGAAGAATTACTGACGTAGTCAGATGACCATTTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56985.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis