Browse Element(s) Details


Os.57041.1.S1_at

Description gb:AK110798.1
DB_XREF= gi:32996007
TID=Os.57041.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57041 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-E01, full insert sequence.
FL= gb:AK110798.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1856011/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18520OsAffx.19729.1.S1_at11/1112+10707377..10707694hypothetical protein
LOC_Os12g18530Os.56361.1.S1_at11/1112+10709377..10715228Nucleotidyltransferase domain containing protein, expressed
LOC_Os12g18540Os.20602.2.S1_x_at10/1112+10716503..10718683hAT family dimerisation domain containing protein
LOC_Os12g18550OsAffx.7632.1.S1_at11/1112+10722045..10722382hypothetical protein
LOC_Os12g18560Os.57041.1.S1_at11/1112+10729706..10730828pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g18570OsAffx.19730.1.S1_at11/1112+10735227..10735637hypothetical protein
LOC_Os12g18590OsAffx.31799.1.S1_at11/1112+10737739..10740929hypothetical protein
LOC_Os12g18600OsAffx.19542.3.S1_x_at7/1112+10743855..10747359retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18600OsAffx.21754.1.S1_x_at1/1112+10743855..10747359retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18610NANA12+10748546..10749208retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18620NANA12+10751824..10752060retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g18630Os.21468.1.S1_at11/1112+10754001..10760219expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0046910molecular_functionpectinesterase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57041.1.S1_at--843--5011Chr12:10730245..10730269 (25 bp)
GCAGTCGTACAGAGGCTGCTCGCCA
LOC_Os12g18560
Os.57041.1.S1_at--122--5671Chr12:10730344..10730368 (25 bp)
GACATGGCGTCCGTGCACGTCAGCG
LOC_Os12g18560
Os.57041.1.S1_at--1071--571Chr12:10730511..10730535 (25 bp)
ATCCAGCAACTAGCAGCTCTGCTTG
LOC_Os12g18560
Os.57041.1.S1_at--422--8791Chr12:10730534..10730558 (25 bp)
TGTTACCGAGCTCAAGTTCACCCAA
LOC_Os12g18560
Os.57041.1.S1_at--1068--2631Chr12:10730557..10730581 (25 bp)
AACCAGCTAACTACTCGCAATTCGT
LOC_Os12g18560
Os.57041.1.S1_at--49--2031Chr12:10730566..10730590 (25 bp)
ACTACTCGCAATTCGTATAGGTACA
LOC_Os12g18560
Os.57041.1.S1_at--277--7451Chr12:10730641..10730665 (25 bp)
GTGTAATGACACGTATTTATCTTTT
LOC_Os12g18560
Os.57041.1.S1_at--8--6111Chr12:10730716..10730740 (25 bp)
GAGTCGAATCCACTTGATATGTTCT
LOC_Os12g18560
Os.57041.1.S1_at--617--211Chr12:10730748..10730772 (25 bp)
ATTTGTATTATCACTCCATAGAGGA
LOC_Os12g18560
Os.57041.1.S1_at--561--8951Chr12:10730786..10730810 (25 bp)
TGCAAAAGGTACATGCGGCCGCCGG
LOC_Os12g18560
Os.57041.1.S1_at--569--8411Chr12:10730802..10730826 (25 bp)
GGCCGCCGGCAGTATGCATGTATTT
LOC_Os12g18560
Target Sequence 
GCAGTCGTACAGAGGCTGCTCGCCACCTGCGCGGCCAAGTACGGCGACGCCCGCGACGCGCTCGCCGCGGCCAAGGGCTC
GATCGCGCAGCAGGACTACGACATGGCGTCCGTGCACGTCAGCGCCGCCGCGGAGTACCCGCAGGTGTGCAGGACGCTGT
TCGGGCGGCAGAGCCCCGGAGACTACCCGCCGGAGCTCGCCGCGGCAGAGGTGGCGCTCAGGCAGCTCTGCTCCGTCGCG
CTCGACATCATCGCGCTCCTCAGCTCATCCAGCAACTAGCAGCTCTGCTTGTTACCGAGCTCAAGTTCACCCAACCAGCT
AACTACTCGCAATTCGTATAGGTACAAATGGTGCAAATATAGTACTGTATAATACTACTGCATAGAATACATATACGTGT
AATGACACGTATTTATCTTTTTTTTTTTGCAAGGGGCACGTATATCAATTAATTGTGTGTCCCAATTAATTAGAGTCGAA
TCCACTTGATATGTTCTTTTGTTAATTTGTATTATCACTCCATAGAGGAGTTGCTGTAGTAGTGCAAAAGGTACATGCGG
CCGCCGGCAGTATGCATGTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57041.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis