Browse Element(s) Details


Os.57071.1.S1_at

Description gb:AK110861.1
DB_XREF= gi:32996070
TID=Os.57071.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57071 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-D07, full insert sequence.
FL= gb:AK110861.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3569011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35650Os.53977.1.S1_at11/114+21538025..21540846pentatricopeptide, putative, expressed
LOC_Os04g35650Os.50682.1.A1_x_at1/114+21538025..21540846pentatricopeptide, putative, expressed
LOC_Os04g35660OsAffx.14163.1.S1_at11/114+21546243..21547257No apical meristem protein, expressed
LOC_Os04g35670NANA4+21551318..21552325transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g35680Os.50533.1.S1_at11/114+21558280..21560175U-box domain containing protein, expressed
LOC_Os04g35690Os.57071.1.S1_at11/114+21563535..21564977TPR Domain containing protein, expressed
LOC_Os04g35700Os.27038.1.S1_at11/114+21565180..21571197mitogen-activated kinase kinase kinase alpha, putative, expressed
LOC_Os04g35710NANA4+21575558..21576310hypothetical protein
LOC_Os04g35720OsAffx.3289.2.A1_at10/114+21580128..21581511hypothetical protein
LOC_Os04g35730NANA4+21582589..21583281transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
GO:0005516molecular_functioncalmodulin binding
GO:0005528molecular_functionFK506 binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57071.1.S1_at--2--6751Chr04:21564384..21564408 (25 bp)
GTTCAGAGATACTACCAACCAGTGG
LOC_Os04g35690
Os.57071.1.S1_at--1016--9711Chr04:21564422..21564446 (25 bp)
TCAACCTCTGGACACAGTGTTCCAT
LOC_Os04g35690
Os.57071.1.S1_at--379--6371Chr04:21564548..21564572 (25 bp)
GATCCGGAGACGGTGTCGATCATCG
LOC_Os04g35690
Os.57071.1.S1_at--162--8711Chr04:21564594..21564618 (25 bp)
TGTCCAGGGACGACGCTGCCAGGTT
LOC_Os04g35690
Os.57071.1.S1_at--286--4351Chr04:21564612..21564636 (25 bp)
CCAGGTTGCAGGACGCCATGAAGAA
LOC_Os04g35690
Os.57071.1.S1_at--950--4331Chr04:21564627..21564651 (25 bp)
CCATGAAGAAGCTGTCTCCGGAGAA
LOC_Os04g35690
Os.57071.1.S1_at--840--3831Chr04:21564797..21564821 (25 bp)
CTGCTCGGGTTCATCGGAGCGTGAT
LOC_Os04g35690
Os.57071.1.S1_at--1002--1971Chr04:21564845..21564869 (25 bp)
ACTGCATGCTTAGTGCTAGTAGATG
LOC_Os04g35690
Os.57071.1.S1_at--171--6131Chr04:21564877..21564901 (25 bp)
GAGTGGCTGTAATTTTTCTTATTCT
LOC_Os04g35690
Os.57071.1.S1_at--1112--10311Chr04:21564891..21564915 (25 bp)
TTTCTTATTCTTTTCTCGACGTAAT
LOC_Os04g35690
Os.57071.1.S1_at--707--4011Chr04:21564934..21564958 (25 bp)
CGTCGAGTTCTTGTGTTTATGGAGC
LOC_Os04g35690
Target Sequence 
GTTCAGAGATACTACCAACCAGTGGGGCAACTTCGTCTTCAACCTCTGGACACAGTGTTCCATCGCCATCGCCATCGCCG
TCTGCTGCTGCTGCGGCTGAGATGATGAACTCCATGGGGGACCCGGCGATGGGGAAGATGGTCGCGTCCGTGGTGCAGGG
CATGGATCCGGAGACGGTGTCGATCATCGGGAAGCAGTTCGGGGTGGACCTGTCCAGGGACGACGCTGCCAGGTTGCAGG
ACGCCATGAAGAAGCTGTCTCCGGAGAACCTGGAGAAGGTGATGGGTTGGGTGAACCGGGCACGGCGCGCGGCGGAGGCC
GCGAGGAAGGCCAAGGAGCTCCTCCTGGGCAGCAGGAGAGGCTGGCTGGTGCTCGCCATTGTCGTGCTCGTCCTCGCGTT
CGTCCTTCATCACCTGCTCGGGTTCATCGGAGCGTGATGCGATGGTGGCCGATGGCCTGGCACTGCATGCTTAGTGCTAG
TAGATGTAGATTTGAGTGGCTGTAATTTTTCTTATTCTTTTCTCGACGTAATAGTCGAGTATGAAATATTCGTCGAGTTC
TTGTGTTTATGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis