Browse Element(s) Details


Os.57078.1.S1_at

Description gb:AK110876.1
DB_XREF= gi:32996085
TID=Os.57078.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57078 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-G03, full insert sequence.
FL= gb:AK110876.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4520011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45140OsAffx.15110.1.S1_at11/115+26128341..26129162UDP-glycosyltransfersase, putative
LOC_Os05g45150OsAffx.27314.1.S1_at10/115+26132020..26134877Anthocyanidin 5,3-O-glucosyltransferase, putative
LOC_Os05g45160NANA5+26135286..26139326retrotransposon protein, putative, unclassified
LOC_Os05g45170Os.48555.1.S1_at11/115+26140159..26141126expressed protein
LOC_Os05g45180Os.51124.1.S1_at11/115+26142402..26144398UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45190OsAffx.15111.1.S1_at8/115+26147547..26148183hypothetical protein
LOC_Os05g45200Os.57078.1.S1_at11/115+26152346..26153859UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os05g45210Os.47765.1.S1_at10/115+26154233..26162628respiratory burst oxidase homolog, putative, expressed
LOC_Os05g45220Os.51511.1.S1_at11/115+26166316..2616808950S ribosomal protein L20, putative, expressed
LOC_Os05g45230OsAffx.27315.1.S1_at11/115+26173688..26174546hypothetical protein
LOC_Os05g45240NANA5+26178012..26180497flavin monoxygenase-like protein floozy, putative

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57078.1.S1_at--184--9511Chr05:26152917..26152941 (25 bp)
TCTCAGGTTTGCTCGCCGGGTGTCA
LOC_Os05g45200
Os.57078.1.S1_at--450--5091Chr05:26152890..26152914 (25 bp)
GCACGCACGGCGAGCTGGACATCGA
LOC_Os05g45200
Os.57078.1.S1_at--661--8031Chr05:26152559..26152583 (25 bp)
GGAGTCGAATGAAGCGTCGCCGATC
LOC_Os05g45200
Os.57078.1.S1_at--749--2791Chr05:26152500..26152524 (25 bp)
AAGAGGCGACGAGGAAATCTGGCTC
LOC_Os05g45200
Os.57078.1.S1_at--582--951Chr05:26152489..26152513 (25 bp)
AGGAAATCTGGCTCGTCGCATCAAT
LOC_Os05g45200
Os.57078.1.S1_at--688--3031Chr05:26152485..26152509 (25 bp)
AATCTGGCTCGTCGCATCAATCATT
LOC_Os05g45200
Os.57078.1.S1_at--377--4971Chr05:26152472..26152496 (25 bp)
GCATCAATCATTTGTCAAGTTTCTG
LOC_Os05g45200
Os.57078.1.S1_at--87--6851Chr05:26152454..26152478 (25 bp)
GTTTCTGATAGACTTTGGCGTGACC
LOC_Os05g45200
Os.57078.1.S1_at--446--10851Chr05:26152440..26152464 (25 bp)
TTGGCGTGACCAAGTGACCGGTCAT
LOC_Os05g45200
Os.57078.1.S1_at--1082--4351Chr05:26152431..26152455 (25 bp)
CCAAGTGACCGGTCATGAATCTTGT
LOC_Os05g45200
Os.57078.1.S1_at--450--5251Chr05:26152415..26152439 (25 bp)
GAATCTTGTTTATTGGTGACAATGT
LOC_Os05g45200
Target Sequence 
TCTCAGGTTTGCTCGCCGGGTGTCACGGCACGCACGGCGAGCTGGACATCGACGAGCTCATGCCGGAGGGGTTCTTGGAG
AGGACCAAGGGCAGGGGGCTCGCCGCCGGGTCGTGGGCGCCGCAGGCGGACGTGCTGCGGCACAGGGCGACCGGCGCGTT
CGTGACTCACTGCGGGTGGAACTCGGTGCTGGAGGGGATCGCCGCCGGCGTGCCACTGCTGTGCTGGCCGCTCTACGCGG
AGCAGAGGCTGAACAAGGTGTTCATCATGGAGGAGGTCGGGGTCGGCGCTGTGATGGCGGGGTACGACGGCGAGGTGGTC
AGAGCCGAGGAGGTGGAGGCGAAGGTTAGGTGGATGCTGGAGTCGAATGAAGCGTCGCCGATCCGTGAGCGAGTGGCGCT
GGCGAAGGAGCGGGCCGAAGAGGCGACGAGGAAATCTGGCTCGTCGCATCAATCATTTGTCAAGTTTCTGATAGACTTTG
GCGTGACCAAGTGACCGGTCATGAATCTTGTTTATTGGTGACAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis