Browse Element(s) Details


Os.57089.1.S1_at

Description gb:AK110893.1
DB_XREF= gi:32996102
TID=Os.57089.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57089 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-A03, full insert sequence.
FL= gb:AK110893.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3064010/11expressed protein
LOC_Os05g306204/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g30600OsAffx.27087.1.S1_at11/115+17645635..17646478hypothetical protein
LOC_Os05g30610Os.28346.3.S1_x_at8/115+17649421..17655139retrotransposon protein, putative, unclassified
LOC_Os05g30620Os.57089.1.S1_at4/115+17657038..17657532hypothetical protein
LOC_Os05g30630OsAffx.14890.1.S1_at11/115+17661375..17661829hypothetical protein
LOC_Os05g30630OsAffx.15866.1.S1_x_at1/115+17661375..17661829hypothetical protein
LOC_Os05g30640Os.57089.1.S1_at10/115+17670490..17672325expressed protein
LOC_Os05g30650NANA5+17674564..17675954hypothetical protein
LOC_Os05g30660Os.53090.1.S1_at11/115+17675973..17678016expressed protein
LOC_Os05g30670OsAffx.27089.1.S1_at11/115+17680351..17681767hypothetical protein
LOC_Os05g30670OsAffx.25936.5.S1_x_at1/115+17680351..17681767hypothetical protein
LOC_Os05g30680Os.54160.1.S1_at11/115+17684726..17686491exocyst subunit EXO70 family protein, putative, expressed
LOC_Os05g30690NANA5+17693166..17693381pentatricopeptide, putative

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Gene Ontology Classification
GO idTypeName
GO:0006904biological_processvesicle docking during exocytosis
GO:0000145cellular_componentexocyst
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57089.1.S1_at--41--2451NONE
AACAATTACGTGTTCATCCTTCCGT
NONE
Os.57089.1.S1_at--554--2592Chr05:17671792..17671816 (25 bp)
AACGCTCAAATTTATGCAGTACCAA
LOC_Os05g30640
Os.57089.1.S1_at--796--1352Chr05:17671816..17671840 (25 bp)
AGAGAAGTACATGCTTGCCTCCTGG
LOC_Os05g30640
Os.57089.1.S1_at--325--1811Chr05:17671843..17671867 (25 bp)
ACCCGTTCTGTATTGCCTACACGAA
LOC_Os05g30640
Os.57089.1.S1_at--1061--6351Chr05:17671870..17671894 (25 bp)
GATGCCACTGTGGTTTCCTAAACAC
LOC_Os05g30640
Os.57089.1.S1_at--243--2411Chr05:17671889..17671913 (25 bp)
AAACACTCCTCGCAGCTGGCAAGAT
LOC_Os05g30640
Os.57089.1.S1_at--1062--5372Chr05:17671948..17671972 (25 bp)
GAAGCTATGGAAGGTCCCCAACCCA
LOC_Os05g30640
Os.57089.1.S1_at--571--1772Chr05:17672034..17672058 (25 bp)
ACCTGGAGGACCATCCGGAGCTGGA
LOC_Os05g30640
Os.57089.1.S1_at--671--1212Chr05:17672134..17672158 (25 bp)
AGTTTTAGACTGACATGGCCATGCG
LOC_Os05g30640
Os.57089.1.S1_at--323--171Chr05:17672231..17672255 (25 bp)
ATTTTGATATGTTCCCACCTCATTC
LOC_Os05g30640
Os.57089.1.S1_at--919--5571Chr05:17672270..17672294 (25 bp)
GAAATCCTCATTCTACCTTACTATG
LOC_Os05g30640
Target Sequence 
AACAATTACGTGTTCATCCTTCCGTCAGGCACAACGCTCAAATTTATGCAGTACCAAGAGAAGTACATGCTTGCCTCCTG
GGAACCCGTTCTGTATTGCCTACACGAAAAGATGCCACTGTGGTTTCCTAAACACTCCTCGCAGCTGGCAAGATTCAAGT
CAGAATTTCAGAAAACATTTAGACATCAGAAGCTATGGAAGGTCCCCAACCCAAGGCTCAGGCAGAAACTGCGAGAAGCC
ATCATTGATAAGGTCATTACTGGATACAAAAGGTACCTGGAGGACCATCCGGAGCTGGAGAAATGCAGCAGTGATCTACA
GGACATGGAAGACATGGTCAACGAGCTATTTGAAGGATGAATAAGGATTGTTCCAGTTTTAGACTGACATGGCCATGCGT
ATGGAGTGTAAACTTTAAATCAGTTACGACGATAAGAGAGGGCGAGGCTAAGGTTAAATAAGTTCAACTGTATTTTGATA
TGTTCCCACCTCATTCTACTTTTTTCCTAGGAAATCCTCATTCTACCTTACTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57089.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis