Browse Element(s) Details


Os.57113.1.S1_at

Description gb:AK110937.1
DB_XREF= gi:32996146
TID=Os.57113.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57113 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-G05, full insert sequence.
FL= gb:AK110937.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3921011/11G2/mitotic-specific cyclin C13-1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39180Os.19075.1.S1_at10/1112+24086315..24090178Metal transporter Nramp2, putative, expressed
LOC_Os12g39190NANA12+24097238..24101056retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g39200Os.9137.1.S1_at11/1112+24104229..24108313seed maturation protein PM23, putative, expressed
LOC_Os12g39210Os.57113.1.S1_at11/1112+24109067..24111268G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os12g39220Os.35718.1.S1_at11/1112+24111988..24113008Zinc finger protein 7, putative, expressed
LOC_Os12g39230OsAffx.7835.1.S1_at10/1112+24114593..24116967hypothetical protein
LOC_Os12g39240OsAffx.20024.1.S1_x_at11/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39240OsAffx.20024.1.S1_at11/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39240OsAffx.28081.1.S1_x_at1/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39250OsAffx.32091.1.S1_at8/1112+24126935..24127811hypothetical protein
LOC_Os12g39260NANA12+24129827..24134840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39270NANA12+24135400..24137958hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0016538molecular_functioncyclin-dependent protein kinase regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57113.1.S1_at--507--7931Chr12:24110646..24110670 (25 bp)
GGATTGCATCTTGGCCATTCATGAC
LOC_Os12g39210
Os.57113.1.S1_at--1033--8431Chr12:24110658..24110682 (25 bp)
GGCCATTCATGACTTGCAGCTCAGA
LOC_Os12g39210
Os.57113.1.S1_at--507--2871Chr12:24110824..24110848 (25 bp)
AAGTGTGTCTCAACATTGCTTCCCC
LOC_Os12g39210
Os.57113.1.S1_at--511--3511Chr12:24110861..24110885 (25 bp)
CTGCGTCATACCTCCAAGATTTAAC
LOC_Os12g39210
Os.57113.1.S1_at--138--6091Chr12:24110887..24110911 (25 bp)
GAGTAGCTGTTTTTGGTCTGCAACT
LOC_Os12g39210
Os.57113.1.S1_at--1055--9811Chr12:24110921..24110945 (25 bp)
TAACAGTCTGAGCTTGTCTCGAGCT
LOC_Os12g39210
Os.57113.1.S1_at--748--5011Chr12:24110973..24110997 (25 bp)
GCAGGGCAGCTTCTCAGCTAAGTTA
LOC_Os12g39210
Os.57113.1.S1_at--692--10091Chr12:24111069..24111093 (25 bp)
TAGGAGCCACTGAATCGCTAGCAGG
LOC_Os12g39210
Os.57113.1.S1_at--319--4851Chr12:24111085..24111109 (25 bp)
GCTAGCAGGCTAACAGGCATTCTCC
LOC_Os12g39210
Os.57113.1.S1_at--770--8591Chr12:24111197..24111221 (25 bp)
TGGTCCATTCCCTTTGTTAATCTTT
LOC_Os12g39210
Os.57113.1.S1_at--231--10811Chr12:24111232..24111256 (25 bp)
TTGTCGGTTACAGTCTCAGTACCTT
LOC_Os12g39210
Target Sequence 
GGATTGCATCTTGGCCATTCATGACTTGCAGCTCAGAAAAAAATGTTCAAACTTAACTGCAATTCGCGACAAGTACAAGC
AACACAAGTTCAAGTGTGTCTCAACATTGCTTCCCCCTTTGATATCCCTGCGTCATACCTCCAAGATTTAACAGAGTAGC
TGTTTTTGGTCTGCAACTTTGCGATGTTAACAGTCTGAGCTTGTCTCGAGCTCCCGGAGATAAAGGAAGAATTACAGTTG
CAGGGCAGCTTCTCAGCTAAGTTAGAGTGCTCTAAGCATTTAGATGCTGAATGGTTTTAAAGCCTGAGCCTTAGGGGGAG
ATTTCAGAGTCTATTTAGGAGCCACTGAATCGCTAGCAGGCTAACAGGCATTCTCCTGTTTTNTGTAAAATTGTAGTTCT
GTATTATAACTTACAACATGGTGTCTTGGTTTGTTGGGAGAAAAACTTGTAATGTTTGATATGCTGGTCCATTCCCTTTG
TTAATCTTTTTTTATGAAATTGTCGGTTACAGTCTCAGTACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis