Browse Element(s) Details


Os.57150.1.S1_at

Description gb:AK111030.1
DB_XREF= gi:32996239
TID=Os.57150.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57150 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-H08, full insert sequence.
FL= gb:AK111030.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g029108/11Glycosyl transferase family 8 protein, expressed
LOC_Os11g031604/11Glycosyl transferase family 8 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g02870Os.47623.1.A1_at2/1112+1042559..1046052GRAS family transcription factor containing protein, expressed
LOC_Os12g02880OsAffx.19459.1.S1_at9/1112+1051853..1052807hypothetical protein
LOC_Os12g02890OsAffx.7466.1.S1_at11/1112+1059932..1060273hypothetical protein
LOC_Os12g02900OsAffx.18648.1.S1_at1/1112+1062020..1067900retrotransposon protein, putative, unclassified
LOC_Os12g02910Os.24025.1.S1_s_at11/1112+1068974..1073692Glycosyl transferase family 8 protein, expressed
LOC_Os12g02910Os.57150.1.S1_at8/1112+1068974..1073692Glycosyl transferase family 8 protein, expressed
LOC_Os12g02920OsAffx.31556.1.S1_at11/1112+1080583..1081152hypothetical protein
LOC_Os12g02930OsAffx.31557.1.S1_at6/1112+1088401..1088841hypothetical protein
LOC_Os12g02930OsAffx.31558.1.S1_x_at1/1112+1088401..1088841hypothetical protein
LOC_Os12g02940OsAffx.31558.1.S1_x_at11/1112+1091580..1091984hypothetical protein
LOC_Os12g02940OsAffx.31557.1.S1_at1/1112+1091580..1091984hypothetical protein
LOC_Os12g02950Os.52945.1.S1_at11/1112+1092738..1095549pentatricopeptide, putative, expressed
LOC_Os12g02950Os.52764.1.S1_x_at3/1112+1092738..1095549pentatricopeptide, putative, expressed
LOC_Os12g02960OsAffx.19460.1.S1_at11/1112+1096484..1097350Glutathione S-transferase, C-terminal domain containing protein, expressed
LOC_Os12g02970OsAffx.19461.1.S1_at11/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02970OsAffx.19461.2.S1_x_at7/1112+1097580..1100299RNA recognition motif, putative, expressed
LOC_Os12g02970OsAffx.19461.2.S1_at2/1112+1097580..1100299RNA recognition motif, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57150.1.S1_at--991--1971Chr12:1074121..1074145 (25 bp)
ACTGCTCACTGCTCTGGAAGGTGGT
NONE
Os.57150.1.S1_at--957--2711Chr12:1074095..1074119 (25 bp)
AAGCAGGTGTCGCTCGGCTTCACTA
NONE
Os.57150.1.S1_at--403--7731Chr12:1074090..1074114 (25 bp)
GGTGTCGCTCGGCTTCACTATGAAG
NONE
Os.57150.1.S1_at--340--4852Chr12:1073621..1073645 (25 bp)
GCTACTCAAGGTAATGCTGCTTGCT
LOC_Os12g02910
Os.57150.1.S1_at--337--1012Chr12:1073613..1073637 (25 bp)
AGGTAATGCTGCTTGCTGATTCTGC
LOC_Os12g02910
Os.57150.1.S1_at--112--3032Chr12:1073609..1073633 (25 bp)
AATGCTGCTTGCTGATTCTGCCCAT
LOC_Os12g02910
Os.57150.1.S1_at--453--112Chr12:1073595..1073619 (25 bp)
ATTCTGCCCATTGGCTGACTCATAA
LOC_Os12g02910
Os.57150.1.S1_at--1080--4171Chr12:1073589..1073613 (25 bp)
CCCATTGGCTGACTCATAACTCTTA
LOC_Os12g02910
Os.57150.1.S1_at--437--8931Chr12:1073580..1073604 (25 bp)
TGACTCATAACTCTTAGTCGCCCAG
LOC_Os12g02910
Os.57150.1.S1_at--1123--331Chr12:1073574..1073598 (25 bp)
ATAACTCTTAGTCGCCCAGCTTTAC
LOC_Os12g02910
Os.57150.1.S1_at--66--2691Chr12:1073546..1073570 (25 bp)
AAGCATAAGAGTGCATACGAAGTTT
LOC_Os12g02910
Target Sequence 
ACTGCTCACTGCTCTGGAAGGTGGTGAAGCAGGTGTCGCTCGGCTTCACTATGAAGGGCCACCACCACCACCATTCCTTG
CCGCCGTCGCCGCCGCCCAAGCGCCGGTGTACCGCCCTGGCCGCGGCCGTCCCTGCGCTCGTCGTCTGCTCCATCCTCCT
GCCCCTCGTCTTCCTCCTGGGTCTCCACCGCCCCGGGCATGGATCGGAGGAGCGCGCCGCGGTTGTCATCAGCACTGAAA
TGGGGTTTAGCAAGCACAAGCATCTGGATGGGAGGATGAAGCACAAGCTACTCAAGGTAATGCTGCTTGCTGATTCTGCC
CATTGGCTGACTCATAACTCTTAGTCGCCCAGCTTTACTGAAAGCATAAGAGTGCATACGAAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis