Browse Element(s) Details


Os.57199.1.S1_at

Description gb:AK111128.1
DB_XREF= gi:32996337
TID=Os.57199.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57199 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-C09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-C09, full insert sequence.
FL= gb:AK111128.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3587011/11Auxin-induced protein 22B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35840Os.24098.1.S1_a_at4/119+20619099..20621316RNA-binding protein, putative
LOC_Os09g35840Os.56892.1.S1_x_at4/119+20619099..20621316RNA-binding protein, putative
LOC_Os09g35850Os.56892.1.S1_at11/119+20629236..20633047RNA recognition motif family protein, expressed
LOC_Os09g35850Os.56892.1.S1_x_at10/119+20629236..20633047RNA recognition motif family protein, expressed
LOC_Os09g35860Os.49782.1.S1_at11/119+20637344..20639287Ras-related protein Rab11B, putative, expressed
LOC_Os09g35870Os.57199.1.S1_at11/119+20640984..20642658Auxin-induced protein 22B, putative, expressed
LOC_Os09g35880Os.10164.1.S1_at11/119+20645934..20649503B-box zinc finger family protein, expressed
LOC_Os09g35890Os.23742.1.S1_at11/119+20654226..20658702kinesin motor family protein, putative, expressed
LOC_Os09g35900Os.5394.1.S1_at1/119+20659309..20659557expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006445biological_processregulation of translation
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005837cellular_component26S proteasome
GO:0008180cellular_componentsignalosome complex
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57199.1.S1_at--604--6031Chr09:20641890..20641912 (23 bp)
GAGATGTTCGTGTCTTCGTGTAAGA
LOC_Os09g35870
Os.57199.1.S1_at--701--8131Chr09:20641384..20641408 (25 bp)
GGACATCGATCGCTCATGCAAGTGG
LOC_Os09g35870
Os.57199.1.S1_at--453--691Chr09:20641339..20641363 (25 bp)
ATGACGCAATTTTCTGACCGACCAA
LOC_Os09g35870
Os.57199.1.S1_at--168--4871Chr09:20641313..20641337 (25 bp)
GCTATGCTGCGCACACATGATTGAT
LOC_Os09g35870
Os.57199.1.S1_at--642--4971Chr09:20641256..20641280 (25 bp)
GCATCTCACTAGCTAGCCTGGAATA
LOC_Os09g35870
Os.57199.1.S1_at--418--5631Chr09:20641213..20641237 (25 bp)
GACACTGCAGATGCGGTCAATCTCT
LOC_Os09g35870
Os.57199.1.S1_at--531--1651Chr09:20641162..20641186 (25 bp)
AGCCTGAATGCCTCTGATACGGTTG
LOC_Os09g35870
Os.57199.1.S1_at--689--9931Chr09:20641145..20641169 (25 bp)
TACGGTTGACTTCCCTGATGAGATC
LOC_Os09g35870
Os.57199.1.S1_at--366--1291Chr09:20641125..20641149 (25 bp)
AGATCCCAACATTTTAGCTCCCTTT
LOC_Os09g35870
Os.57199.1.S1_at--271--4191Chr09:20641106..20641130 (25 bp)
CCCTTTTGCCTCTAGCTAGTTGTAA
LOC_Os09g35870
Os.57199.1.S1_at--15--3231Chr09:20641033..20641057 (25 bp)
CAAGAGTTGTTCGTTGTACCTCCCA
LOC_Os09g35870
Target Sequence 
GAGATGTTCGTGTCTTCGTGTAAGAGGATGAGAGTGATGCGAGCTTGTGAGGCGAGAGGCTTGAGCTCAAACGTGTGACA
GAAACAATTGCAGGTTGACCAGTGCGTTGTAGATAACTGAACCTGGACATCGATCGCTCATGCAAGTGGTGAAAGCGCTG
ACGAAAAGGATGACGCAATTTTCTGACCGACCAAAGCTATGCTGCGCACACATGATTGATGCAACAACATCTACAGAAAG
ACCAGCATATCAGCATCTCACTAGCTAGCCTGGAATAAATGTTAGTTAAGTAGTTGACACTGCAGATGCGGTCAATCTCT
CCAGCTTGCTGCTTGCTTCTCACATGAGCCTGAATGCCTCTGATACGGTTGACTTCCCTGATGAGATCCCAACATTTTAG
CTCCCTTTTGCCTCTAGCTAGTTGTAAGTTGTTTCGGCTGTATATGTATGTATGTCGCATCACATGTACATGGATCAAGA
GTTGTTCGTTGTACCTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57199.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis