Browse Element(s) Details


Os.57407.1.S1_at

Description gb:AK111473.1
DB_XREF= gi:32996682
TID=Os.57407.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57407 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-F03, full insert sequence.
FL= gb:AK111473.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0273011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02690Os.7459.1.S1_at11/118+1114784..1120093MA3 domain-containing protein, putative, expressed
LOC_Os08g02700Os.10579.1.S1_at11/118+1121539..1123208Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os08g02710OsAffx.16795.1.S1_at11/118+1125211..1129368hypothetical protein
LOC_Os08g02720OsAffx.28997.1.S1_at11/118+1131781..1133349hypothetical protein
LOC_Os08g02730Os.57407.1.S1_at11/118+1142598..1144210expressed protein
LOC_Os08g02730Os.1678.1.S1_at1/118+1142598..1144210expressed protein
LOC_Os08g02740OsAffx.28998.1.S1_at11/118+1145194..1146309hypothetical protein
LOC_Os08g02750OsAffx.28999.1.S1_at11/118+1148535..1149905expressed protein
LOC_Os08g02760NANA8+1155898..1157776retrotransposon, putative, centromere-specific
LOC_Os08g02770NANA8+1158632..1160776retrotransposon protein, putative, unclassified
LOC_Os08g02780NANA8+1161403..1164694retrotransposon protein, putative, unclassified
LOC_Os08g02790NANA8+1166395..1170053retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57407.1.S1_at--319--9331Chr08:1143617..1143641 (25 bp)
TCGCCGATCTTTCTCAACGACGTGA
LOC_Os08g02730
Os.57407.1.S1_at--1052--8911Chr08:1143639..1143663 (25 bp)
TGAGCGCCGGCTGGCTCGTGAACAT
LOC_Os08g02730
Os.57407.1.S1_at--279--8871Chr08:1143726..1143750 (25 bp)
TGATGTGCTCGTTCCTGTCGGTGGT
LOC_Os08g02730
Os.57407.1.S1_at--300--2771Chr08:1143774..1143798 (25 bp)
AAGACGTGCATCAGCTGCGGGCGAA
LOC_Os08g02730
Os.57407.1.S1_at--323--7311Chr08:1143803..1143827 (25 bp)
GTGCTGTACAGCACGCTGAGCAACG
LOC_Os08g02730
Os.57407.1.S1_at--97--8131Chr08:1143838..1143862 (25 bp)
GGACTTCTTCAAGCGGATCAGCCAG
LOC_Os08g02730
Os.57407.1.S1_at--500--3991Chr08:1143943..1143967 (25 bp)
CGTCCACAAGTTCCTGTACAAGCAC
LOC_Os08g02730
Os.57407.1.S1_at--899--2211Chr08:1143960..1143984 (25 bp)
ACAAGCACATAAGGGCCATCAGCAT
LOC_Os08g02730
Os.57407.1.S1_at--11--8291Chr08:1144013..1144037 (25 bp)
GGCATCTTCAAAGCACTCAGGGAGC
LOC_Os08g02730
Os.57407.1.S1_at--858--9791Chr08:1144061..1144085 (25 bp)
TAAGCGTTGTTACTTTCTCCAACAA
LOC_Os08g02730
Os.57407.1.S1_at--1110--10851Chr08:1144115..1144139 (25 bp)
TTGGACACTTATACAAAGCCGTTTT
LOC_Os08g02730
Target Sequence 
TCGCCGATCTTTCTCAACGACGTGAGCGCCGGCTGGCTCGTGAACATGGCGGCCCTGGAGGCGAGCGGCGGCGCCACCAC
CGCGGATCAGTCGTCCTCGTCCTCGTCCGTGATGTGCTCGTTCCTGTCGGTGGTGGCGATGCTGATGGACAGGGAAGAAG
ACGTGCATCAGCTGCGGGCGAAGCAGGTGCTGTACAGCACGCTGAGCAACGCGCAGACGCTGGACTTCTTCAAGCGGATC
AGCCAGCACCTCGGCTTCGGCCACCGCTACTTCTACATCTTGCAACAGATCAACAAGTTCAAGCAAGGCAGGCCGGTGAG
GTCCGCCGTCCACAAGTTCCTGTACAAGCACATAAGGGCCATCAGCATCATCTTGTCCATCGCCAGCGTGCTCGTTGGCA
TCTTCAAAGCACTCAGGGAGCTATAGTAATTAAGCTTTCTTAGTTAAGCGTTGTTACTTTCTCCAACAAACAAAAAATAT
ATAATTTGATTTAATCGTTTGGACACTTATACAAAGCCGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis