Browse Element(s) Details


Os.57447.1.S1_x_at

Description gb:D29740.1
DB_XREF= gi:474003
TID=Os.57447.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57447 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA, partial homologous to ribosomal protein rp21c gene
DEF=Rice mRNA, partial homologous to ribosomal protein rp21c gene.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g023406/1160S acidic ribosomal protein P1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02310NANA8+874322..876939hypothetical protein
LOC_Os08g02320OsAffx.16788.1.S1_at9/118+882466..883768hypothetical protein
LOC_Os08g02330Os.6253.1.S1_a_at11/118+886583..892726RNA-binding protein, putative, expressed
LOC_Os08g02330OsAffx.28987.1.S1_x_at9/118+886583..892726RNA-binding protein, putative, expressed
LOC_Os08g02330OsAffx.28987.1.S1_at8/118+886583..892726RNA-binding protein, putative, expressed
LOC_Os08g02340Os.12280.1.S1_x_at11/118+897776..89935060S acidic ribosomal protein P1, putative, expressed
LOC_Os08g02340Os.57447.1.S1_x_at6/118+897776..89935060S acidic ribosomal protein P1, putative, expressed
LOC_Os08g02350OsAffx.28988.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350Os.16539.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.21992.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.30172.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350Os.20190.1.S1_at1/118+900179..928280expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006414biological_processtranslational elongation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57447.1.S1_x_at--1061--9631NONE
TCAGTCTGCATGAGTTCGTAGATCA
NONE
Os.57447.1.S1_x_at--79--7171NONE
GTCTGCATGAGTTCGTAGATCAAGC
NONE
Os.57447.1.S1_x_at--272--4991NONE
GCATGAGTTCGTAGATCAAGCTCGA
NONE
Os.57447.1.S1_x_at--60--6071Chr06:26419146..26419171 (23 bp)
GAGTTCGTAGATCAAGCTCGAGCTC
NONE
Os.57447.1.S1_x_at--43--10631Chr07:21227344..21227373 (23 bp)
TTCGTAGATCAAGCTCGAGCTCGCC
NONE
Os.57447.1.S1_x_at--622--4391Chr08:897970..897990 (21 bp)
GCCAATGTCGTCCAGCGAGGTCGCC
LOC_Os08g02340
Os.57447.1.S1_x_at--299--771Chr08:897970..897994 (25 bp)
ATGTCGTCCAGCGAGGTCGCCTGCA
LOC_Os08g02340
Os.57447.1.S1_x_at--30--10551Chr08:898007..898030 (24 bp)
TTCATCCTCCACGACGATGGCATCC
LOC_Os08g02340
Os.57447.1.S1_x_at--616--1291Chr08:898155..898179 (25 bp)
AGATCGCCACCCTGGTGAAGGCGGC
LOC_Os08g02340
Os.57447.1.S1_x_at--597--4391Chr08:898160..898184 (25 bp)
GCCACCCTGGTGAAGGCGGCCAACA
LOC_Os08g02340
Os.57447.1.S1_x_at--734--7351Chr08:898169..898193 (25 bp)
GTGAAGGCGGCCAACATCAAGGTCG
LOC_Os08g02340
Target Sequence 
TCAGTCTGCATGAGTTCGTAGATCAAGCTCGAGCTCGCCNGCCAATGTCGTCCAGCGAGGTCGCCTGCACGCTCGCCGCC
CTTCATCCTCCACGACGATGGCATCCCCATNACCTCTGAGAAGATCGCCACCCTGGTGAAGGCGGCCAACATCAAGGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57447.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis