Browse Element(s) Details


Os.6253.1.S1_a_at

Description gb:AK103042.1
DB_XREF= gi:32988251
TID=Os.6253.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6253 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117F04, full insert sequence.
FL= gb:AK103042.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0233011/11RNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02310NANA8+874322..876939hypothetical protein
LOC_Os08g02320OsAffx.16788.1.S1_at9/118+882466..883768hypothetical protein
LOC_Os08g02330Os.6253.1.S1_a_at11/118+886583..892726RNA-binding protein, putative, expressed
LOC_Os08g02330OsAffx.28987.1.S1_x_at9/118+886583..892726RNA-binding protein, putative, expressed
LOC_Os08g02330OsAffx.28987.1.S1_at8/118+886583..892726RNA-binding protein, putative, expressed
LOC_Os08g02340Os.12280.1.S1_x_at11/118+897776..89935060S acidic ribosomal protein P1, putative, expressed
LOC_Os08g02340Os.57447.1.S1_x_at6/118+897776..89935060S acidic ribosomal protein P1, putative, expressed
LOC_Os08g02350OsAffx.28988.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350Os.16539.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.21992.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.30172.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350Os.20190.1.S1_at1/118+900179..928280expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6253.1.S1_a_at--141--9251Chr08:886985..887097 (25 bp)
TCCTTGCCAATAAGGGTGAGCCCCT
LOC_Os08g02330
Os.6253.1.S1_a_at--474--9331Chr08:886932..886956 (25 bp)
TCGCCAGCTGATGCACTAGGTGTTG
LOC_Os08g02330
Os.6253.1.S1_a_at--864--9551Chr08:886833..886857 (25 bp)
TCTTTTGTTTTATCTGCTCGGCCTT
LOC_Os08g02330
Os.6253.1.S1_a_at--945--9091Chr08:886819..886843 (25 bp)
TGCTCGGCCTTCTTTTTACTGTACC
LOC_Os08g02330
Os.6253.1.S1_a_at--1095--9971Chr08:886728..886752 (25 bp)
TACCTTGCACATAGCGCTTCTTAGA
LOC_Os08g02330
Os.6253.1.S1_a_at--646--4471Chr08:886698..886722 (25 bp)
GCCTGACGCTTTTGTCCTTGATGCA
LOC_Os08g02330
Os.6253.1.S1_a_at--215--2431Chr08:886666..886690 (25 bp)
AAAACTCCTGGACTTTTGTCGCTGT
LOC_Os08g02330
Os.6253.1.S1_a_at--573--6751Chr08:886643..886667 (25 bp)
GTTCAGTTGTTTGCTGTGTCTTGTT
LOC_Os08g02330
Os.6253.1.S1_a_at--352--7451Chr08:886628..886652 (25 bp)
GTGTCTTGTTTGCTACTGAGAACCT
LOC_Os08g02330
Os.6253.1.S1_a_at--861--5431Chr08:886609..886633 (25 bp)
GAACCTGATGAACTCGTTACCTGAA
LOC_Os08g02330
Os.6253.1.S1_a_at--828--2291Chr08:886585..886609 (25 bp)
AAATGGAGACTTATCGTTATGCTGT
LOC_Os08g02330
Target Sequence 
TCCTTGCCAATAAGGGTGAGCCCCTCAAAGACTCCCGTGCGTCCCCGTGCACCTCGCCAGCTGATGCACTAGGTGTTGTA
GGTACAGGAGGTGCTGATGGCACTGCTTATATATAGAGATAGACATATATGAAAGAGAAGTTACGATATATGTCTTTTGT
TTTATCTGCTCGGCCTTCTTTTTACTGTACCGTTAGTAAGTATCTACACTTGCAACGGAGGGGGGAAACCGTTACCGGGT
TTGGTCTTTTTCTTTTTTACCTTGCACATAGCGCTTCTTAGAAGCGGGCCTGACGCTTTTGTCCTTGATGCAGCAAGGCA
AAACTCCTGGACTTTTGTCGCTGTTCAGTTGTTTGCTGTGTCTTGTTTGCTACTGAGAACCTGATGAACTCGTTACCTGA
AAATGGAGACTTATCGTTATGCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6253.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis