Browse Element(s) Details


OsAffx.28987.1.S1_x_at

Description tigr:9636.m00133
TID=OsAffx.28987.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g023309/11RNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02310NANA8+874322..876939hypothetical protein
LOC_Os08g02320OsAffx.16788.1.S1_at9/118+882466..883768hypothetical protein
LOC_Os08g02330Os.6253.1.S1_a_at11/118+886583..892726RNA-binding protein, putative, expressed
LOC_Os08g02330OsAffx.28987.1.S1_x_at9/118+886583..892726RNA-binding protein, putative, expressed
LOC_Os08g02330OsAffx.28987.1.S1_at8/118+886583..892726RNA-binding protein, putative, expressed
LOC_Os08g02340Os.12280.1.S1_x_at11/118+897776..89935060S acidic ribosomal protein P1, putative, expressed
LOC_Os08g02340Os.57447.1.S1_x_at6/118+897776..89935060S acidic ribosomal protein P1, putative, expressed
LOC_Os08g02350OsAffx.28988.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350Os.16539.1.S1_at11/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.21992.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350OsAffx.30172.1.S1_at1/118+900179..928280expressed protein
LOC_Os08g02350Os.20190.1.S1_at1/118+900179..928280expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28987.1.S1_x_at--873--6091Chr08:889387..889411 (25 bp)
GAGTCAGATGCTTTACGTTTTATGT
LOC_Os08g02330
OsAffx.28987.1.S1_x_at--517--1891NONE
ACGTTTTATGTCCATGTTGCAAATC
NONE
OsAffx.28987.1.S1_x_at--445--1551Chr08:888769..888793 (25 bp)
AGCTTTCATTTTCTTGGTGTTCAGG
LOC_Os08g02330
OsAffx.28987.1.S1_x_at--741--3151Chr08:888596..888620 (25 bp)
AATTCTGTTCTTCGTTTTGCTTTCA
LOC_Os08g02330
OsAffx.28987.1.S1_x_at--259--1091Chr08:888472..888496 (25 bp)
AGGGCTGCTCTAAATTTGTCGGGAA
LOC_Os08g02330
OsAffx.28987.1.S1_x_at--309--7711Chr08:888423..888447 (25 bp)
GGGTGCTGCCATCAAAAACTGCGAT
LOC_Os08g02330
OsAffx.28987.1.S1_x_at--969--191NONE
ATTTCTGCCCAGGTCCGATGATGAG
NONE
OsAffx.28987.1.S1_x_at--685--9451Chr08:887947..887971 (25 bp)
TCGGCTGAGGTTGCTTGGTGACTAC
LOC_Os08g02330
OsAffx.28987.1.S1_x_at--779--111Chr08:887918..887942 (25 bp)
ATTCTACTCGCATTGCCTTTGTGGA
LOC_Os08g02330
OsAffx.28987.1.S1_x_at--851--4811Chr08:887103..887127 (25 bp)
GCTCTCAACTGCAGTGGTGTCATAC
LOC_Os08g02330
OsAffx.28987.1.S1_x_at--705--7131Chr08:887085..887109 (25 bp)
GTCATACTGGGTTCCTTGCCAATAA
LOC_Os08g02330
Target Sequence 
GAGTCAGATGCTTTACGTTTTATGTCCATGTTGCAAATCAGAAATTGTAAGCATGTTGATAGCTTTCATTTTCTTGGTGT
TCAGGTCACTGAAGAGCAATTGGCAGCACTATTTATCAACTGTGGACAGGTTGTGGACTGTCGTATGTGTGGGGATCCGA
ATTCTGTTCTTCGTTTTGCTTTCATAGAGTTCACTGATGAGGAGAGTGCAAGGGCTGCTCTAAATTTGTCGGGAACCGTG
CTTGGATATTATCCTGTCAGGGTGCTGCCATCAAAAACTGCGATTGCACCTGTTAACCCAACATTTCTGCCCAGGTCCGA
TGATGAGCGTGAGATGTGTGCAAGGACTATTTACTGCACAAACATTGACAAGAAGGTCTCTCAGGCAGATGTGAAATTGT
TCTTCGAGTCGATATGTGGAGAGGTATATCGGCTGAGGTTGCTTGGTGACTACCATCATTCTACTCGCATTGCCTTTGTG
GAGTTTGTGATGGCTGAAAGTGCCACTGCTGCTCTCAACTGCAGTGGTGTCATACTGGGTTCCTTGCCAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28987.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis