CREP Browser

Os.57459.1.S1_x_at

Description

gb:D10422.1
DB_XREF= gi:218129
TID=Os.57459.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57459 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for F1-ATPase (480 gene), partial sequence
DEF=Rice mRNA for F1-ATPase (480 gene), partial sequence.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g43850	1/11	ATP synthase delta chain, mitochondrial precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g43810	Os.49529.1.S1_at	11/11	6	+	26383997..26384661	expressed protein
LOC_Os06g43820	OsAffx.5095.1.S1_at	10/11	6	+	26387053..26390622	hypothetical protein
LOC_Os06g43830	NA	NA	6	+	26392281..26392499	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g43840	Os.17305.1.A1_s_at	11/11	6	+	26398338..26404234	Protein kinase domain containing protein, expressed
LOC_Os06g43850	Os.12365.1.S1_at	10/11	6	+	26407107..26409933	ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os06g43850	Os.57459.1.S1_x_at	1/11	6	+	26407107..26409933	ATP synthase delta chain, mitochondrial precursor, putative, expressed
LOC_Os06g43860	Os.4608.3.A1_a_at	11/11	6	+	26410491..26413838	Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os06g43870	OsAffx.15915.1.S1_at	11/11	6	+	26422833..26426811	expressed protein
LOC_Os06g43880	Os.50648.1.S1_at	11/11	6	+	26434370..26438320	homogentisic acid geranylgeranyl transferase, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0000275	cellular_component	proton-transporting ATP synthase complex, catalytic core F(1) (sensu Eukaryota)
GO:0005739	cellular_component	mitochondrion
GO:0046933	molecular_function	hydrogen-transporting ATP synthase activity, rotational mechanism

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.57459.1.S1_x_at--268--85	1	NONE	ATGGAAGACTGAAGCACATTGATCG	NONE
Os.57459.1.S1_x_at--574--1077	1	Chr06:26408877..26409337 (25 bp)	TTGTCAGGACAGTTATTCCACTCCC	LOC_Os06g43850
Os.57459.1.S1_x_at--385--123	1	NONE	AGAGGAGAAGGCACTTAAGGAGACC	NONE
Os.57459.1.S1_x_at--760--291	1	NONE	AAGGAGACCTTCCAAGATATTCTTG	NONE
Os.57459.1.S1_x_at--428--759	1	NONE	GGGAAGAACCCAACCTATCCTTGAT	NONE
Os.57459.1.S1_x_at--1017--537	1	NONE	GAAGAACCCAACCTATCCTTGATTG	NONE
Os.57459.1.S1_x_at--889--331	1	NONE	CACTTTGGGCAGAAGCTCTTTCACA	NONE
Os.57459.1.S1_x_at--901--759	1	NONE	GGGCAGAAGCTCTTTCACATGTAGA	NONE
Os.57459.1.S1_x_at--1058--539	1	NONE	GAAGCTCTTTCACATGTAGATCACG	NONE
Os.57459.1.S1_x_at--398--75	1	NONE	ATGTAGATCACGACTAGGGCGCGAA	NONE
Os.57459.1.S1_x_at--905--127	1	NONE	AGATCACGACTAGGGCGCGAAACTC	NONE

Target Sequence

ATGGAAGACTGAAGCACATTGATCGNATTGCTGAGAGATTTGTTGATTTGNNCATGGCACATAAGGGGGAGGTGAAGGTN
CTTGTCAGGACAGTTATTCCACTCCCCGAAAAAGAGGAGAAGGCACTTAAGGAGACCTTCCAAGATATTCTTGGGAAGAA
CCCAACCTATCCTTGATTGNACAGAAGATCGACTTACAGCATCNTCGGGAGGGCTAGTTATNCACTTTGGGCAGAAGCTC
TTTCACATGTAGATCACGACTAGGGCGCGAAACTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis

Browse Element(s) Details