Browse Element(s) Details


Os.57529.1.S1_at

Description gb:AF403126.1
DB_XREF= gi:22086619
GEN=RLK14
TID=Os.57529.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57529 (NCBI UniGene Cluster)
DEF=Oryza sativa S-locus receptor-like kinase RLK14 (RLK14) mRNA, complete cds.
PROD=S-locus receptor-like kinase RLK14
FL= gb:AF403126.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5399411/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53960NANA4+31932266..31933038retrotransposon protein, putative, unclassified
LOC_Os04g53970OsAffx.26593.1.S1_at10/114+31933786..31936082hypothetical protein
LOC_Os04g53980Os.20602.2.S1_x_at11/114+31944431..31946611hAT family dimerisation domain containing protein
LOC_Os04g53990Os.25006.1.A1_at11/114+31947661..31950512expressed protein
LOC_Os04g53994Os.57529.1.S1_at11/114+31954508..31958289D-mannose binding lectin family protein, expressed
LOC_Os04g53998Os.49500.1.S1_at11/114+31959768..31963106D-mannose binding lectin family protein, expressed
LOC_Os04g54002Os.20532.1.S1_at10/114+31970352..31974125D-mannose binding lectin family protein, expressed
LOC_Os04g54010Os.20531.1.S1_at10/114+31974718..31977883Protein kinase domain containing protein, expressed
LOC_Os04g54010OsAffx.30180.4.S1_x_at1/114+31974718..31977883Protein kinase domain containing protein, expressed
LOC_Os04g54020Os.20531.1.S1_at5/114+31978528..31983657receptor-like kinase, putative
LOC_Os04g54020OsAffx.14405.1.S1_at1/114+31978528..31983657receptor-like kinase, putative
LOC_Os04g54020OsAffx.30180.4.S1_x_at1/114+31978528..31983657receptor-like kinase, putative

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57529.1.S1_at--962--9591Chr04:31955077..31955101 (25 bp)
TCATAAGTGGCTTCAGGATCAGCTC
LOC_Os04g53994
Os.57529.1.S1_at--202--7591Chr04:31955037..31955061 (25 bp)
GGGCTTCCCAAACCTTATAGCTTAT
LOC_Os04g53994
Os.57529.1.S1_at--988--6011Chr04:31954874..31954898 (25 bp)
GAGAGTTGTCCACTCCATGAAGTTT
LOC_Os04g53994
Os.57529.1.S1_at--508--6031Chr04:31954848..31954872 (25 bp)
GAGATGTATCCACATAGCGCTCTTG
LOC_Os04g53994
Os.57529.1.S1_at--371--1651Chr04:31954833..31954857 (25 bp)
AGCGCTCTTGTGCATTCAGGACCAT
LOC_Os04g53994
Os.57529.1.S1_at--486--5851Chr04:31954814..31954838 (25 bp)
GACCATCCAGATGATAGGCCGCTGA
LOC_Os04g53994
Os.57529.1.S1_at--456--1351Chr04:31954767..31954791 (25 bp)
AGAGAACAATACTGCACCGCTACCT
LOC_Os04g53994
Os.57529.1.S1_at--338--5291Chr04:31954665..31954689 (25 bp)
GAATGGCGTGAGCATTACAGCCTTG
LOC_Os04g53994
Os.57529.1.S1_at--679--10431Chr04:31954613..31954637 (25 bp)
TTATCCTTGTCTGTAAATTTCGGCA
LOC_Os04g53994
Os.57529.1.S1_at--753--2251Chr04:31954599..31954623 (25 bp)
AAATTTCGGCATTTTCTGCAGCTAT
LOC_Os04g53994
Os.57529.1.S1_at--471--5291Chr04:31954562..31954586 (25 bp)
GAATGGTGATTCATTGCTTCTGCTT
LOC_Os04g53994
Target Sequence 
TCATAAGTGGCTTCAGGATCAGCTCACCCCATCTCATAATGGGCTTCCCAAACCTTATAGCTTATTCTTGGAGCTTATGG
AAAGATGGAAATGCAAGGGATTTGGTGGACTCGAGCGTTGTGGAGAGTTGTCCACTCCATGAAGTTTTGAGATGTATCCA
CATAGCGCTCTTGTGCATTCAGGACCATCCAGATGATAGGCCGCTGATGTCATCTGTTGTGTTCATGTTAGAGAACAATA
CTGCACCGCTACCTCAACCAAAGCAACCTATATTTTTTGTGCACAAAAAACGCGCAACTGAATATGCAAGAGAGAATATG
GAAAATTCCGTGAATGGCGTGAGCATTACAGCCTTGGAGGGGAGATGAATGTTTATATTTGTTTTATCCTTGTCTGTAAA
TTTCGGCATTTTCTGCAGCTATGCGTTATTGTAGGAATGGTGATTCATTGCTTCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57529.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis