Browse Element(s) Details


Os.20532.1.S1_at

Description gb:AF403128.1
DB_XREF= gi:22086625
GEN=RLK11
TID=Os.20532.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20532 (NCBI UniGene Cluster)
DEF=Oryza sativa S-locus receptor-like kinase RLK11 (RLK11) mRNA, complete cds.
PROD=S-locus receptor-like kinase RLK11
FL= gb:AF403128.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5400210/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53980Os.20602.2.S1_x_at11/114+31944431..31946611hAT family dimerisation domain containing protein
LOC_Os04g53990Os.25006.1.A1_at11/114+31947661..31950512expressed protein
LOC_Os04g53994Os.57529.1.S1_at11/114+31954508..31958289D-mannose binding lectin family protein, expressed
LOC_Os04g53998Os.49500.1.S1_at11/114+31959768..31963106D-mannose binding lectin family protein, expressed
LOC_Os04g54002Os.20532.1.S1_at10/114+31970352..31974125D-mannose binding lectin family protein, expressed
LOC_Os04g54010Os.20531.1.S1_at10/114+31974718..31977883Protein kinase domain containing protein, expressed
LOC_Os04g54010OsAffx.30180.4.S1_x_at1/114+31974718..31977883Protein kinase domain containing protein, expressed
LOC_Os04g54020Os.20531.1.S1_at5/114+31978528..31983657receptor-like kinase, putative
LOC_Os04g54020OsAffx.14405.1.S1_at1/114+31978528..31983657receptor-like kinase, putative
LOC_Os04g54020OsAffx.30180.4.S1_x_at1/114+31978528..31983657receptor-like kinase, putative
LOC_Os04g54030OsAffx.26594.1.S1_at11/114+31986455..31986739hypothetical protein
LOC_Os04g54040NANA4+31987597..31988546hypothetical protein
LOC_Os04g54050OsAffx.16205.1.S1_at2/114+31989841..31994321hypothetical protein
LOC_Os04g54050Os.49232.1.S1_x_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54050Os.45982.1.A1_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54050OsAffx.18764.1.S1_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54050OsAffx.23640.3.S1_x_at1/114+31989841..31994321hypothetical protein
LOC_Os04g54060Os.35344.18.S1_x_at11/114+31995770..32001816transposon protein, putative, Mutator sub-class
LOC_Os04g54060Os.35344.3.S1_x_at9/114+31995770..32001816transposon protein, putative, Mutator sub-class
LOC_Os04g54060OsAffx.22940.5.S1_x_at3/114+31995770..32001816transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20532.1.S1_at--163--5231Chr04:31970867..31970891 (25 bp)
GAATACAATGAGTACCACAACACTG
LOC_Os04g54002
Os.20532.1.S1_at--436--3271Chr04:31970850..31970874 (25 bp)
CAACACTGGAGGGACGCTAGACTAA
LOC_Os04g54002
Os.20532.1.S1_at--742--6151Chr04:31970759..31970849 (25 bp)
GAGGTCAAGCTTTACTATACGTGAT
LOC_Os04g54002
Os.20532.1.S1_at--1127--2411Chr04:31970711..31970735 (25 bp)
AAAACAGTGGAGTTTGCTGCGTGGT
LOC_Os04g54002
Os.20532.1.S1_at--896--3331Chr04:31970594..31970618 (25 bp)
CACTGTATTTCTATTCCACATGTGG
LOC_Os04g54002
Os.20532.1.S1_at--479--4371Chr04:31970579..31970603 (25 bp)
CCACATGTGGTTGCTTTTATCTGAA
LOC_Os04g54002
Os.20532.1.S1_at--411--1471Chr04:31970466..31970490 (25 bp)
AGCCAAAAGGTCATAAGCCGGCTTT
LOC_Os04g54002
Os.20532.1.S1_at--980--10031Chr04:31970400..31970424 (25 bp)
TAGATATCCAAATTAGCAATGCCTG
LOC_Os04g54002
Os.20532.1.S1_at--732--5191Chr04:31970385..31970409 (25 bp)
GCAATGCCTGGCCATGATTTCCATT
LOC_Os04g54002
Os.20532.1.S1_at--459--191Chr04:31970369..31970393 (25 bp)
ATTTCCATTCCATAGAGGCCGGATT
LOC_Os04g54002
Os.20532.1.S1_at--1064--7931Chr04:31970349..31970373 (25 bp)
GGATTTCTATCCATTTACCTCTAAA
NONE
Target Sequence 
GAATACAATGAGTACCACAACACTGGAGGGACGCTAGACTAAGAGGTCAAGCTTTACTATACGTGATTTCAGCATAGATA
ATTCTATGTTTTTACAATTTAATGCTTATGATAATGAATTTCAGTGATGTGATATATGACTTTAAATCTTTAATGGAAAA
CAGTGGAGTTTGCTGCGTGGTGAAGAATGCTTGTGAATATTAATCTTATTGATTGGTATTTATATATAAAAAATGTTACA
TTGCAGACAAGGTATTGCTTACAAATTTGCAAACACTGTATTTCTATTCCACATGTGGTTGCTTTTATCTGAAGTTAATC
ATAAACCTAAAAGAATGTGACATGTTTACAAATACACAAATTATAATGGCATTTTTAAAAACCAATTAAACCATTTGTTT
TAGCCAAAAGGTCATAAGCCGGCTTTTAATAGAAGATAATAACCAAAGACTATGGTTGGTATTGAAATAGATATCCAAAT
TAGCAATGCCTGGCCATGATTTCCATTCCATAGAGGCCGGATTTCTATCCATTTACCTCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20532.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis